| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_89141 |
|---|
| Symbol | |
|---|
| ID | 4838646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 239973 |
|---|
| End bp | 244735 |
|---|
| Gene Length | 4763 bp |
|---|
| Protein Length | 1571 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640389961 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384008 |
|---|
| Protein GI | 150864974 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase
[COG0169] Shikimate 5-dehydrogenase
[COG0337] 3-dehydroquinate synthetase
[COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase
[TIGR01093] 3-dehydroquinate dehydratase, type I
[TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase
[TIGR01357] 3-dehydroquinate synthase
[TIGR01809] shikimate-5-dehydrogenase, fungal AROM-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCTG TCGAGAAGGT ATCGATTCTC GGAGCCGAGA CCATCCATGT GGGATACGGC
ATCCAGGACC ACATTGTCCA GGAGGTAATT TCACATCTAG CCTCATCTAC CTATGTGATT
GTCACAGACA CCAACATGGC CAGAACTACT CCGTTCACCA AGTTGCGTAA CAAATTCGAA
AGCAAACTTA AAGAATTACG TCCGGAGTCC CGTTTGCTTT TCTATTCAGT TTCACCAGGT
GAAAACAACA AAAACAGAGA AACCAAGGCT GCTGTAGAAG ACTTCTTATT GCAACAGGGA
TGTACCAGAG ACACCGTAAT TCTAGCTGTA GGAGGCGGAG TGATCGGGGA CATGATTGGT
TTTGTAGCTG CAACCTTTAT GAGAGGGGTC AGAGTCGTTC AGGTTCCCAC TAGTTTGTTA
GCCATGGTTG ACTCTTCTGT AGGTGGTAAG ACTGCCATAG ATACTCCATT GGGGAAGAAC
TTTGTAGGAG CATTCCACCA GCCGGAGTAC GTCTTCGCAG ATGTTTCGTT CTTGGAGACC
TTACCAACTA GACAGTTCAT CAACGGAATG GCTGAAGTCG TTAAGACGGC TGCGATCTGG
AACGAAGAGG AATTCACTCG CTTGGAGAAG TTCTCCAAGA AGTTCCTCGC TGTAGTTTCT
GCCAAAACCC CAGATTTAAT CTCAATTAAG GAAGAGTTAG TCAAAACGGT ACTTGAATCT
ATTCGTGTAA AGGCTTTTGT CGTTTCGTCC GATGAGAAGG AAACTGGCTT GAGAAACTTG
CTTAACTTTG GTCATACAAT TGGCCATGCA ATTGAAGCCG TGTTGACACC CCAAGCTCTC
CACGGTGAAT GTGTTTCCAT CGGTATGATC AAAGAAGCTG AGTTGGCACG TTATTTGGGT
GTTTTGTCAC CTGTAGCAGT CGCTAGATTG TCGAAGTGTC TTGTAGCTTA TGGTTTACCT
GTTTCTATCG ACGAGAAAGA CTTTTTGAAG AAGGTGGGAA ACAAACGTCA CAATGTGGAA
ATTGACATCT TGTTGAAGAA GATGGCTATT GACAAGAAGA ATGACGGTAG TAAGATTAGG
TGTGTCATCC TCGAAGCCAT CGGAAAGTGC TACCAGTTGA AGGCTCACCA AGTCTCCAAA
CAAGACTTGA GCTTTGTTCT CACAGATGAA GTATTGGTAC ATCCATTTGA TGACAAATTG
ATTCCTAAGA CTAACGTCGT CATTCCTCCA GGCTCCAAGT CCATCTCTAA CAGAGCGTTG
GTGTTAGCTG CCTTGGGTAC TGGTACTGTC AGAATCAAGA ACTTGTTGCA CTCTGACGAT
ACCAAACACA TGTTGGAGGC AGTTGCTTCT TTGAAGGGAG CTTCTATCTC TACCGAAGAC
AATGGTGAAA CCATTGTCGT CACTGGAAAT GGTGGAAAGC TCGTATCTTG CGACGAGCAA
TTGTACTTAG GTAACGCCGG TACAGCCTCC AGATTCTTGA CTTCTGTTGC ACCTCTCGTA
GGTATTAACC CTCAATCTGG TGAACATGTA GTTTTAACAG GTAATGCCAG AATGCAGGAA
AGGCCAATTG GACCTTTGGT GGACGCTTTG AGAGCCAATG GCTCGGAAAT CGACTACCTC
AACAAGGAAG GATCGTTACC ATTGAAGGTT AAGGCAGGTA AGGGCTTGAA CGGTGGAAGA
ATAGAGTTAG CTGCTACTAT TTCGTCACAA TACGTTTCTT CCATCTTGAT GTGTGCTCCT
TACGCCAATG AGCCGGTTAC TTTGTCGCTC GTAGGAGGTA AGCCAATCTC GCAGTTGTAC
ATCAACATGA CGATTGCCAT GATGAAGACG TTTGGGATTG TCGTGACCAA GTCCGAAACT
GAAGAACACA CTTACCACAT TCCCCGTGGA TCTTACGTAA ACCCTAAGGA ATACGTTATC
GAATCAGATG CTTCTTCAGC TACTTACCCA TTGGCTTTTG CTGCCTTGAC AGGAACATCT
TGTACGATTC CAAACATCGG TTCTTCTTCT TTACAGGGAG ACGCAAGGTT TGCTGTTGAT
GTTTTGAGAC CTATGGGCTG TGAAGTGGTT CAGACTGCTA CTTCCACTAC TGTCACTGGT
CCATCTGTAG GAAACTTGAA GCCTTTGCCC CATGTAGATA TGGAGCCAAT GACGGATGCT
TTCCTTACTG CTTCTGTAGT CGCCGCTGTA GCCAAGAACG GCACGCAGTC TACCTCTATT
ACTGGTATCG CCAACCAGAG AGTGAAGGAA TGTAATCGTA TCGCCGCTAT GGTATCTGAA
TTGGCCAAAT TTGGTGTTGT AGCCAACGAG TTGCCAGACG GAATTGAAAT CCATGGAATT
TCACCAAATG ACTTGGTTAC CCCATCCACA GAAAAGCGTG GAATCAAAAC TTTTGACGAT
CACAGAGTGG CCATGTCGTT TTCGCTTTTG GCTGGTTTGT GTAAGGATAA GGTACTCATT
CAAGAAAGAT CTTGTACTGG TAAGACCTGG CCGGGATGGT GGGACATCTT ACACACCAAG
TTCAAGGTTG CTATCGATGG CTACGAGCTT CCATTACAAC ACGAAGACAG TACTGCCTTG
GTTGAAAAAC ATGGTAATGG TAAGAGAAGT ATCATCGTTA TTGGAATGAG AGGCGCTGGG
AAGTCCACCT TGTCGAAGTG GATGGCTTCC TTCTTGGGCT TCAAGCTTGT AGACTTGGAC
GATGTTCTTG AAGAAAAAAT TGGCACTGAT ATCAGGTCGT TTGTACAACA GCAAGGCTGG
GAAGAATTCC GTAAGCAAGA AGCAATTGTA GCTAAAGAAT CTTTCATTAA GTTCTCTGAA
GGCTGTGTAT TGTCTACTGG GGGTGGAATT GTAGAAGGCG AAGAGGCTAG AGAATCCTTA
AAGAGCTATG TAAAGTCTGG TGGAATTGTC TTACACTTAC ATCGTGATTT GGACGAGACC
GTTGTACTTC TTTCTGCGGA CACAACTAGA CCAGCCTACG TGGATGAAAT CAAACAGGTT
TGGTTACGTA GAGAAAATTG GTACCGTGAA TGTTCTAACT ATCACTTCTA TTCAGCACAT
TGTTCCAGTG ATGCCGAATT CAAGCACTTG CGAAACTCCT TCACTACTTA CATCAAGACC
ATCACCGGCT TCCATGTGGC TCAGATTCCT AAGAAGAGGT CCTTCTACAC TAGTTTGACG
TTCTCTGACT TGACTGAAGT TGCTTCATCC TTGGAAGACA TCTCCACAGG TTCTGATGCC
ATCGAATTAA GAGTTGACCT TTTGAAGGAA ACGACTCATA CTTTCGTTGC TGACCAAACT
GCCATCTTGA GAAAGTCGAC TAATCTTCCG ATCATCTACA CTATCAGAAC AGAATCACAA
GGAGGAAAGT TCCCCGACAA CAAATTCGAA GAGCTCGAAG AGTTGTTGGC TTTGGGTATT
AAGTTAGGTG TGCAATACTT GGACCTTCAG TTAGACTTGC CTAATGACTT GCTTGAAAGA
ATTTTGGAAT CGAAGAAGTT CACCAAGATC ATTGCTTCCT ACGTTGATGT TTCTGGCTCA
TTAAGATGGG ATAACGTCGA ATGGAAAAAC AGATACAATC AGGGTGTTTC TCTTGGTGCT
GACCTTGTCA AGTTGGTTGG AAGAGCCAAT CTGTTCCAAG ATAACTTGAG CTTGGAAGTA
TTCAGAGGCA CCAGCACATT GAAGCCTTTA ATTGCCTACA ATGTTGGTGA AAAAGGTAAG
TTGTCTAGAG TGTTGAACCC AAGATTGACT CCAGTTACTC ACGCAAAGAT TCCTGCCGAA
TCTGGTAACG AAGGAGCATT GGATGTCGCT CAGATCAACA AAGCGTACAC TGACATTGGT
GGCTTGTCAG AGAAGCACTT CTGGATTGTC GGCAACCCTG TTGGCCATAG TCGTTCTCCC
AACTTGCACA ATGCTGGCTA CAAGAAGTTG AACTTGCCAT ACGTGTTTGA CAGATTTGAG
ACATCTGATG CTGGAGAAGC ATTTCAGAAA TTGATCAAAG AAGACAAGAA CTTCGGCGGT
TTGGCTGTGA CCATGCCCTT GAAGGTTGAT ATCATGAAAT ACACTGATAA GTTGTCTGAT
TCAGCTCAAG TTATTGGCGC TGTTAATACT GTGATTGAAT TGGAGGGCGA ACAAGGAAAG
TATTTGGGTG AGAACACCGA CTGGGTTGGT ATTTCAGAGT CTTTTGTTAG GGATGGAATT
CCCAACCTTG AAAACGTCAA TGTCAACGGT TTGGTTGTCG GTGGTGGAGG CACTTCTCGT
GCTGCTGTCT ACGCTTTGCA CCAATTAGGT TGCAAAAAGA TCTACATGCT CAATCGTACG
GTTTCCAAGA TTCAAGAGAT TCAGAAGAAC TTCCCTGCTG AGTATAACAT TGAAATTTTG
GACAGTGTTG AAGCTGTTGA AGCTGCACAA CCTATCTCGT TGATTGTTTC TTGTATTCCA
GCAGACAAGC CAATTGACGA GCAATTGTTG AACAAGCTTG AGAGAGTATT GTACGTTGGA
GGTGAAGCCA AGATTGGTGG ATTCACCCCT TCCTTATTAG AAGCTTCCTA CAAGCCCAGA
GTTACTCCTA TCATGAAGAT CGCTCTGGAG AAGTATGAGT GGAACGTGAT TCCTGGTGTG
GAAATGTTGG TGAACCAAGG CATTACGCAA TTTCAGTTGC ACACTGGTTT TGTTGCCCCC
TACGATGTGG TTCACGATGC TGTTGTGAAC CAATGAAGTA CTAGTATATA CAAAAAGTTG
ATAAGACCAT ATACAATTAT TCT
|
|---|
| Protein sequence | MTSVEKVSIL GAETIHVGYG IQDHIVQEVI SHLASSTYVI VTDTNMARTT PFTKLRNKFE
SKLKELRPES RLLFYSVSPG ENNKNRETKA AVEDFLLQQG CTRDTVILAV GGGVIGDMIG
FVAATFMRGV RVVQVPTSLL AMVDSSVGGK TAIDTPLGKN FVGAFHQPEY VFADVSFLET
LPTRQFINGM AEVVKTAAIW NEEEFTRLEK FSKKFLAVVS AKTPDLISIK EELVKTVLES
IRVKAFVVSS DEKETGLRNL LNFGHTIGHA IEAVLTPQAL HGECVSIGMI KEAELARYLG
VLSPVAVARL SKCLVAYGLP VSIDEKDFLK KVGNKRHNVE IDILLKKMAI DKKNDGSKIR
CVILEAIGKC YQLKAHQVSK QDLSFVLTDE VLVHPFDDKL IPKTNVVIPP GSKSISNRAL
VLAALGTGTV RIKNLLHSDD TKHMLEAVAS LKGASISTED NGETIVVTGN GGKLVSCDEQ
LYLGNAGTAS RFLTSVAPLV GINPQSGEHV VLTGNARMQE RPIGPLVDAL RANGSEIDYL
NKEGSLPLKV KAGKGLNGGR IELAATISSQ YVSSILMCAP YANEPVTLSL VGGKPISQLY
INMTIAMMKT FGIVVTKSET EEHTYHIPRG SYVNPKEYVI ESDASSATYP LAFAALTGTS
CTIPNIGSSS LQGDARFAVD VLRPMGCEVV QTATSTTVTG PSVGNLKPLP HVDMEPMTDA
FLTASVVAAV AKNGTQSTSI TGIANQRVKE CNRIAAMVSE LAKFGVVANE LPDGIEIHGI
SPNDLVTPST EKRGIKTFDD HRVAMSFSLL AGLCKDKVLI QERSCTGKTW PGWWDILHTK
FKVAIDGYEL PLQHEDSTAL VEKHGNGKRS IIVIGMRGAG KSTLSKWMAS FLGFKLVDLD
DVLEEKIGTD IRSFVQQQGW EEFRKQEAIV AKESFIKFSE GCVLSTGGGI VEGEEARESL
KSYVKSGGIV LHLHRDLDET VVLLSADTTR PAYVDEIKQV WLRRENWYRE CSNYHFYSAH
CSSDAEFKHL RNSFTTYIKT ITGFHVAQIP KKRSFYTSLT FSDLTEVASS LEDISTGSDA
IELRVDLLKE TTHTFVADQT AILRKSTNLP IIYTIRTESQ GGKFPDNKFE ELEELLALGI
KLGVQYLDLQ LDLPNDLLER ILESKKFTKI IASYVDVSGS LRWDNVEWKN RYNQGVSLGA
DLVKLVGRAN SFQDNLSLEV FRGTSTLKPL IAYNVGEKGK LSRVLNPRLT PVTHAKIPAE
SGNEGALDVA QINKAYTDIG GLSEKHFWIV GNPVGHSRSP NLHNAGYKKL NLPYVFDRFE
TSDAGEAFQK LIKEDKNFGG LAVTMPLKVD IMKYTDKLSD SAQVIGAVNT VIELEGEQGK
YLGENTDWVG ISESFVRDGI PNLENVNVNG LVVGGGGTSR AAVYALHQLG CKKIYMLNRT
VSKIQEIQKN FPAEYNIEIL DSVEAVEAAQ PISLIVSCIP ADKPIDEQLL NKLERVLYVG
GEAKIGGFTP SLLEASYKPR VTPIMKIASE KYEWNVIPGV EMLVNQGITQ FQLHTGFVAP
YDVVHDAVVN Q
|
|---|
| |