Gene PICST_88266 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_88266 
Symbol 
ID4838235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp1205483 
End bp1206276 
Gene Length794 bp 
Protein Length222 aa 
Translation table12 
GC content44% 
IMG OID640389550 
Productpredicted protein 
Protein accessionXP_001383859 
Protein GI150864864 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.130438 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
AATATGTTCT TTTCCTTGCC CTCTCAATCA CATTTTGTTC AATAGCAATA TGGCTCCACA 
CACCAGACAA GCAACTGCCA CTATTGAAGA CGACCAGGAT TTGCTAGTTC CAGTCCACGA
CCATAAGAAA AGGCATTTGG ATGTTAGAGA TGTTGTTGAG ATCAGATCGT CTCCTTACTA
CGATAAGAGC CACTGGTTGG ATTTGAAAAC CCTTGAAGAG CCTTACAAAG TGCTCGCTTT
GGCATTACAG TCTTTCCAAC CGGTTACGGA GAAGTATGCT TTCGATCCCT ACCAGGAAGC
GTTCAACATC TCTGAAGTGA TCGAGCTTGC GAAGGATTAC TCCAAACAAC TACAAGTGGA
TTTTCCCAAA ACTACACTTT ACGTCATTGC ATTCAGATCA ATTTTGTACG CGGAAGTCCA
AGCTTCCGCA GAGAAGAGAC AGTTTCTAGC AAAAGTAGAC AATGATTCCC ATATAGAAGC
CAACGTATCT GGAGGGCTCT TGAAATATTG GTTTGGAACT CCAGACGATG TTCACGGCCA
GAATCTTGCA ACCTGTTGGT GGGTGAGCAA ACAGCATGCA AAAAATGGGG GAGGTGGTGA
AGCCCATAGG CTGGGAATGA AGGCTGTCCG ACTGTGGTTC GAACACTGGC AGGTAGAGGA
GTACGAGTTG ATCATAGAAA AAGACATAGC GTCATACAAC TTCAATAGAG TGGCATAGTT
TAGATAGGAA CAATTTTGCT GCAAGGATTT TTCTCGCCGA AGATAAGGCT AAAAAATAAA
CGTAAAGTTC ACGT
 
Protein sequence
MAPHTRQATA TIEDDQDLLV PVHDHKKRHL DVRDVVEIRS SPYYDKSHWL DLKTLEEPYK 
VLALALQSFQ PVTEKYAFDP YQEAFNISEV IELAKDYSKQ LQVDFPKTTL YVIAFRSILY
AEVQASAEKR QFLAKVDNDS HIEANVSGGL LKYWFGTPDD VHGQNLATCW WVSKQHAKNG
GGGEAHRSGM KAVRSWFEHW QVEEYELIIE KDIASYNFNR VA