| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_87381 |
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| Symbol | RET1 |
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| ID | 4836780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 1346198 |
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| End bp | 1349777 |
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| Gene Length | 3580 bp |
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| Protein Length | 1155 aa |
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| Translation table | 12 |
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| GC content | 45% |
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| IMG OID | 640388095 |
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| Product | DNA-directed RNA polymerase III |
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| Protein accession | XP_001383024 |
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| Protein GI | 126132998 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.200295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | AAGCAAGAAC TCGTTGCAGA CATGGCTCCC AAAAGAAAGG CAGTCAAGCT CGAGGCCGAG
TCGGACGAAG CTTTTCAGGA GTTGTTCCAG CCGGAGTACA GAGGGAAGAA ATTGACCGAT
GAGATCAACA CTGCGGAAGA CAAGTGGAAC CTATTACCAG CATTTTTGAA GGTGAAGGGA
TTGGTCAAGC AGCATTTGGA TTCATTCAAC TACTTTGTGG ATGTGGACTT GAAAAAGATC
ATCAGGGCCA ACGAATTGGT GCTTTCCGAC GTAGACCCTG AGTTCTACTT GAAGTACTTG
GACATCAGAG TTGGCCACAA GTCTTCTTCG GCTCCTGGAA CAAAGGAGGT TATTTTGCCT
CCTCACGAAT GCCGTTTGCG TGATTTGACA TATTCGGCAC CGATTTACGT TGATGTAGAG
TACACCAGAG GCCGCAAGAT CATTATGCAT AAGGACTTGG AGATTGGTAG AATGCCCGTT
ATGCTCAGAT CCAACAAATG TATCCTAGAC GGCATCAACG ACAAGCAGAT GGCCAAGTTT
GACGAGTGCC CATTGGATCC CGGTGGATAT TTTGTTGTTA ACGGTACAGA AAAGGTCATC
TTAGTGCAAG AACAATTGTC CAAGAATAGA ATCATTGTGG AGGCTGATGA GAAAAAGGGT
ATAGTGCAAG CTTCAGTCAC TTCGTCTACC CACGAACGTA AGTCCAAAAC TTATGTAATC
ACCAAAAACG ACAAGATTTA CTTGAAGCAC AACTCTATAT CTGAAGATAT TCCAATTGTC
ATTGTGCTCA AGGCTGCTGG GATCACTTCT GACTTGGAAA TCTTACAATT GGTATGTGGA
TCCGATCCAC AGTACCAGGA CTTGTTTGTA GTTAACTTCG AAGAGGCAGC CAAGTTGGAA
GTTTTCACTC AACAGCAGGC TTTAAACTAT GTAGGCAAGA GAGTTAAGAC CATCAGAAGA
GCCGGTGCCG CTAAGTTGTC TGTTTTGCAA GAGGGTATTG AAGCCATTGC TACCACGGTT
ATTGCTCATA TAACTGTAGC TGATTTACAG TTCCGTGAGA AGGCATTGTA CATCGCTACC
ATGGCCAGAA GGGTGGTTAT GACTATGCAC AACCCCAAGA TGGTTGACGA CAGAGACTAT
GTCGGTAACA AGAGATTGGA GTTGGCAGGC CAGTTAATGT CTTTGTTGTT TGAAGATTTG
TTTAAGAAGT TCAACTCTGA CTTTAAGGCT AACATCGACA AGATCTTGAA GAAGCCCAGC
AGAACATCAG AGTTTGACGC CTTACTTTCG ATTAACATCC ACTCCAACAA CATCACCATG
GGATTGAACA GAGCCATTTC CACCGGTAAC TGGTCATTGA AACGTTTCAA GATGGAAAGA
GCTGGGGTTA CCCATGTCTT ATCTCGTTTG TCGTATATCT CTGCTTTGGG TATGATGACA
CGTATTTCAT CTCAGTTTGA GAAGTCCAGA AAGGTGTCTG GTCCCAGAGC GTTGCAACCT
TCCCAGTTTG GGATGTTGTG TACTTCTGAT ACGCCAGAAG GTGAAGCCTG TGGTTTGGTT
AAGAACTTAG CCTTGATGAC ACACATCACC ACAGATGATG AGGAGGCACC TATCCGAAAG
TTGTGTTACG TCTTAGGTTG TGAAAACATC TTAGGAATTG ACTCGGCTAC TTTGCATTCT
CAAGGTAACT TTGGTATATA TCTTAACGGT ACCTTGATAG GAACATCCAG GTTCCCTTCC
AAGTTTGTGA CAGACTTCCG TCGATTGAGA AGAACGGGCA AGATCTCGGA GTTTGTCTCC
ATCTATACTA ACACTCACCA AACTGCTGTT CACATAGCTA CTGATGGGGG AAGAATCTGT
CGTCCCTTGA TAATTGTCAA GAACAACGAG CCCATGGTGA AGGCTGAGCA TTTACTCAAA
TTGAGACAAG GCGAATGGGC TTTTGATGAC TTTTTGTCTC ACGGGCTAGT CGAGTATCTT
GATGTTAACG AAGAAAACGA CTCATTGATT GCATTATACG AAAAGGACTT AGATCCTTCT
CAGCCCGTAA CCCATTTGGA AATCGAGCCC TTCACAGTGT TAGGTGCTGT GGCTGGTTTG
ATTCCATACC CACACCATAA CCAGTCACCC AGAAACACAT ATCAGTGTGC GATGGGTAAA
CAGGCTATAG GTGCAATTGC CTACAACCAG TTCAGGAGAA TCGACACCTT GTTGTACTTC
ATGGTTTATC CACAACAACC TATGGTCAAG ACCAAGACCA TCGAGTTGAT CGATTACGAC
AAGTTGCCGG CCGGTCAAAA CGCTACGGTG GCTGTGATGT CATATTCTGG GTACGATATC
GAAGATGCCT TGGTGTTGAA CAAATCTTCC ATCGATAGAG GGTTCGGACG TTGTCAGGTC
GTTCGTAAAA ACACCATACA ATTGAAGAGG TACCCCAATC ATACTAAGGA TATTGTTTCT
GGTATGAGAG TTGACGAAGA CGGTGAGCCC ATTTTCCCCC ACAAGGCTTT GGGACCTGAT
GGATTGGGAG AAATCGGTGC CAGGGTGGAA AATGGCCAAG TTTATGCCAA TAAGTTTGTT
CCTACAAATG CTGGAGAGTC TGTCTTGGGC CATAATGAAC AAATGGCCGG AGCTGAGTCT
CATCGTGAAG CTGCAGCTTA CTACAAGGGC CCAGAGCCTT CGTACGTAGA CCAGGTGATG
ATGTCTGTCA GTGACAATGA CCAGGCCTTG ATCAAGGTAT TGTTGCGACA GACCAGAAGA
CCAGAGTTAG GTGATAAGTT TTCGTCTAGA CATGGTCAAA AAGGTGTTTG TGGTATCATT
GTTCAACAGG AAGATTTGCC TTTCAACGAC GATGGTATTT CTCCCGATAT CATTATGAAC
CCACATGGTT TCCCATCACG TATGACGGTG GGCAAGATGA TCGAGTTAAT ATCAGGAAAG
GCTGGTGTTT TGAACGGATC TCTCGAGTAC GGTACTTGTT TTGGAGGATC CAAGCTTGAG
GACATGTCCA AAATCCTCGT AGAGAAGGGA TTCTCGTACT CGGGTAAGGA CATGTTGTAT
TCGGGTATTA CTGGTGAATG TTTACAGGCC TACATTTTCT TTGGACCTAT TTACTATCAG
AAGTTGAAGC ATATGGTTCT CGACAAGATG CACGCTAGAG CCAGAGGGCC AAGAGCAGTC
TTGACCAGAC AACCTACAGA AGGTAGATCT AGAGACGGTG GGTTGAGATT GGGAGAAATG
GAGAGAGACT GTGTCATTGC CTACGGTGCA TCTCAGTTGT TGTTGGAACG TTTGATGATT
TCGTCTGATG CGTTCGAGGT CGATGTATGT AACAAGTGTG GATTGATGGG CTACAACTCG
TGGTGTACCA CATGTAAGAG TTTCGAACAT GTCATCAAGA TGACGATTCC ATACGCGGCC
AAATTGTTGT TCCAGGAGTT GTTGTCGATG AACATTGCAC CACGGTTGAA GCTTGGGGAT
GTGTTCTAGA GCATTTACTT AATGTATAAT AGTAATATAG TAAAGTATCA TCGTATATAG
TATTAGAGAA ATGGTATTAA ATTATTCAAT TGTAGGTGAT
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| Protein sequence | MAPKRKAVKL EAESDEAFQE LFQPEYRGKK LTDEINTAED KWNLLPAFLK VKGLVKQHLD
SFNYFVDVDL KKIIRANELV LSDVDPEFYL KYLDIRVGHK SSSAPGTKEV ILPPHECRLR
DLTYSAPIYV DVEYTRGRKI IMHKDLEIGR MPVMLRSNKC ILDGINDKQM AKFDECPLDP
GGYFVVNGTE KVILVQEQLS KNRIIVEADE KKGIVQASVT SSTHERKSKT YVITKNDKIY
LKHNSISEDI PIVIVLKAAG ITSDLEILQL VCGSDPQYQD LFVVNFEEAA KLEVFTQQQA
LNYVGKRVKT IRRAGAAKLS VLQEGIEAIA TTVIAHITVA DLQFREKALY IATMARRVVM
TMHNPKMVDD RDYVGNKRLE LAGQLMSLLF EDLFKKFNSD FKANIDKILK KPSRTSEFDA
LLSINIHSNN ITMGLNRAIS TGNWSLKRFK MERAGVTHVL SRLSYISALG MMTRISSQFE
KSRKVSGPRA LQPSQFGMLC TSDTPEGEAC GLVKNLALMT HITTDDEEAP IRKLCYVLGC
ENILGIDSAT LHSQGNFGIY LNGTLIGTSR FPSKFVTDFR RLRRTGKISE FVSIYTNTHQ
TAVHIATDGG RICRPLIIVK NNEPMVKAEH LLKLRQGEWA FDDFLSHGLV EYLDVNEEND
SLIALYEKDL DPSQPVTHLE IEPFTVLGAV AGLIPYPHHN QSPRNTYQCA MGKQAIGAIA
YNQFRRIDTL LYFMVYPQQP MVKTKTIELI DYDKLPAGQN ATVAVMSYSG YDIEDALVLN
KSSIDRGFGR CQVVRKNTIQ LKRYPNHTKD IVSGMRVDED GEPIFPHKAL GPDGLGEIGA
RVENGQVYAN KFVPTNAGES VLGHNEQMAG AESHREAAAY YKGPEPSYVD QVMMSVSDND
QALIKVLLRQ TRRPELGDKF SSRHGQKGVC GIIVQQEDLP FNDDGISPDI IMNPHGFPSR
MTVGKMIELI SGKAGVLNGS LEYGTCFGGS KLEDMSKILV EKGFSYSGKD MLYSGITGEC
LQAYIFFGPI YYQKLKHMVL DKMHARARGP RAVLTRQPTE GRSRDGGLRL GEMERDCVIA
YGASQLLLER LMISSDAFEV DVCNKCGLMG YNSWCTTCKS FEHVIKMTIP YAAKLLFQEL
LSMNIAPRLK LGDVF
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