Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_81035 |
Symbol | RPD3 |
ID | 4851778 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | + |
Start bp | 2803440 |
End bp | 2805428 |
Gene Length | 1989 bp |
Protein Length | 500 aa |
Translation table | |
GC content | 46% |
IMG OID | 640393486 |
Product | histone deacetylase transcription modifier |
Protein accession | XP_001386874 |
Protein GI | 126275574 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.773072 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ACAGGGTCCA ACTGCTGTGG GGAATACTAC TCATAGACGA CCTCTCGAAA CCAAACACCG ACGCGTCCGT TTCAGAGGCT GAATTGACCC AGTTTGTATA CTGATAGAGC CGCCAGTCAT TTTGTACCAG AAGCCATACT AGATAGCCTA CAGGCTCTAC CGAAGCATAC AGAAAACCAA CTAAAAAAAG CTAAAACTTC AAAATCAATT CAAATTTACA AGCAGATTAC AACTGCCATT TCAGATCCAC GAAATACTCG TACTTTCAAA AAAATTTCAC ATTAACTACT AGCGATGTAC GTACAGCTTC CATTTGATGA GCTCAAGGTA GATCCGACAC AGAAGAAGCG GATTGCTTAC TTCTACGATG CCGATATCGG CAACTACGCC TACGGAGCCG GCCATCCCAT GAAACCCCAT AGAATAAGAA TGGCCCACTC GTTGATCATG AACTATGGCT TATATAAGAA GATGGAAATC TACCGAGCCA AGCCAGCCAC AAAGCAGGAG ATGTGTCAGT TCCATACTGA TGAGTATATC GACTTCTTGA GTCGTGTGGG ACCTGACAAC TTGGACATGT TTGCTAAAGA ACAGATCAAG TTTAACGTTG GTGATGACTG TCCTGTTTTT GATGGGTTGT TTGAATACTG TGGTATCTCG GGAGGTGGAT CCATGGAAGG TGCTGCTCGG TTGAACCGAG GTAAGTGTGA TATTGCTATC AACTACGCTG GGGGATTGCA CCACGCGAAG AAGTCCGAGG CTTCAGGCTT CTGTTACTTG AACGATATCG TTTTGGGTAT TATCGAGTTG TTGCGCTACC ATCCTAGAGT ATTGTACATC GATATTGATG TCCACCACGG TGATGGAGTC GAGGAAGCAT TCTATACTAC TGACAGAGTG ATGACAGCTT CGTTCCACAA GTACGGTGAG TTTTTCCCCG GAACTGGTGA ACTTAGAGAT ATTGGAGTAG GCAAGGGTAA GTACTATAGT GTCAATGTTC CGTTGAGAGA TGGGATTGAT GATGCAACGT ATAAGTCTGT GTTCGAGCCC TTGATCAGCA AGATCATCGA GTGGTACCAG CCCTCGGCCA TTGTGTTGCA GTGTGGTGGA GATTCATTGA GTGGGGACAG ATTGGGCTGT TTCAACTTGT CGATGGCTGG CCATGCCAAC TGTATCAACT TTGTCAAGTC GTTCAACATT CCCATGATGG TTGTAGGAGG TGGAGGTTAT ACTATGAGAA ATGTAGCCAG AACTTGGGCT TTCGAGTCGG GTTTGTTGAA CAACGTGATA TTGCCCTCGG AATTGCCTTA TAACGAATAC TACGAATACT ATGGTCCTGA CTACAAGCTT GACGTCAGAC CTTCGAACAT GTACAACACC AATTCGCCCG AGTTTTTGAA CAAGATCTTG ACCAGCATCA TCACCAACTT GGAGAATACC AAACACGCAC CATCGGTGCA GATGAACGAA GTTCCTAGAG ACGCCGAGGA TCTTGGAGAC GTTGATGAGG ACACCAAAGA AGCCATAGAC ACCAAGGGTG GATCGCAGCA GGCCAGAGAT GAACAAATAC AGCCAGAGAA TGAATTCTAC GACGAGGATG ACAAGGATGA GGGCGAAAAG ATGATTGTGG ACAACAGCGA ATCTAATGGC TCAGAGACTA CTGGAGCAAC TGTAGCTCCT TCCACTAATA ATATCGAGAC TCAGGCTCCA GTAGAAGCTG CAAAGGAAGT TGAAGTAGAG TCCAAAGCTG AAGTAGAAAC TCCAGCAGTA ACAACTACAG TAGCAGAAAT CCCAGCTGCA GTTGAAACTG AAGTTAAGTC GGTTCCAGAT GCTTCTATTG AAGTCAAAGA AAAGCCAATC GAAAGGGCTC CTGCTGAAGA AGCCAAAGAT GTCGAAGATG CCAAAGATGC CAAAGATGTT CCATCCGCTT CCGTGTTGAC CAAGGAAGAG TTGGACGAGA TCGAAGAGTT GAACAAGGGT GTAAATTAG
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Protein sequence | MYVQLPFDEL KVDPTQKKRI AYFYDADIGN YAYGAGHPMK PHRIRMAHSL IMNYGLYKKM EIYRAKPATK QEMCQFHTDE YIDFLSRVGP DNLDMFAKEQ IKFNVGDDCP VFDGLFEYCG ISGGGSMEGA ARLNRGKCDI AINYAGGLHH AKKSEASGFC YLNDIVLGII ELLRYHPRVL YIDIDVHHGD GVEEAFYTTD RVMTASFHKY GEFFPGTGEL RDIGVGKGKY YSVNVPLRDG IDDATYKSVF EPLISKIIEW YQPSAIVLQC GGDSLSGDRL GCFNLSMAGH ANCINFVKSF NIPMMVVGGG GYTMRNVART WAFESGLLNN VILPSELPYN EYYEYYGPDY KLDVRPSNMY NTNSPEFLNK ILTSIITNLE NTKHAPSVQM NEVPRDAEDL GDVDEDTKEA IDTKGGSQQA RDEQIQPENE FYDEDDKDEG EKMISVPDAS IEVKEKPIER APAEEAKDVE DAKDAKDVPS ASVLTKEELD EIEELNKGVN
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