Gene PICST_79556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_79556 
Symbol 
ID4840707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009047 
Strand
Start bp567470 
End bp568474 
Gene Length1005 bp 
Protein Length262 aa 
Translation table12 
GC content44% 
IMG OID640392022 
Productpredicted protein 
Protein accessionXP_001386303 
Protein GI126139561 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1471] Ribosomal protein S4E 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.116079 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
CGACAAAATG GGTAGAGGAC CAAAGAAGCA CTTGAAGAGA TTAGCCGCTC CATCCCACTG 
GATGTTGGAC AAATTGTCCG GAACTTACGC TCCAAGACCA TCGGCTGGTC CACACAAGTT
GAGAGAATCC TTGCCTTTGG TTGTCTTCTT GAGAAACAGA CTTAAGTACG CTTTGAACGG
TAGAGAAGTC AAGGCTATCT TGATGCAACA ACATGTCAAG GTTGACGGTA AGGTCAGAAC
TGACTCTACT TTCCCAGCTG GTTTCATGGA TGTTATCTCC TTGGAAGCTA CCAACGAACA
CTTCAGATTG ATCTATGATG TCAAGGGTAG ATTCGCTGTC CACAGAATCA CCGCTGAAGA
AGCTTCCTAC AAGTTGGGTA AGGTCAAGAA GGTCCAATTA GGTAAGAGAG GTGTTCCATA
CGTTGTCACC CACGACGGTA GAACTCTCAG ATACCCAGAC CCATTGATCA GAGCCAACGA
CACCGTCAAG ATCGACTTGG CTACCGGTAA GATCACTGAC TTCATCAAGT TCGACACTGG
TAGATTGGTT ATGGTTACCG GTGGTCGTAA CTTGGGTAGA GTTGGTGTCA TTGTGCACAG
AGAAAAGCAC GAAGGTGGTT TCGACTTGGT CCACATCAAG GACTCTCTTG ACAACACTTT
CGTCACCAGA TTGGCCAACG TCTTCGTCAT CGGTACCGAA GCCGGTAAGC CATGGGTTTC
CTTGCCAAAG GGTAAGGGTA TCAAGTTGTC AATTTCTGAA GAAAGAGACA GAAGAAGAGC
CCAACAAGGA TTGTAAGTGC TAGCTTTGGC TGGAGCACTG TGATCTTTGA TCTCTATAGT
TGCATTTAAT GTAATATAAG TATAATAGCA ATTCTGTTGA AGTAGTGAAG GAGTATCATG
GTAGAGTTGT ATAAAAAATG TATATAGATG AACAGCACGT AAGTTCATTG TATTTAGTTC
ATTGGATTTT TCATACTCTT ATCATCTAAC TACAGTGCAT TGCAT
 
Protein sequence
MGRGPKKHLK RLAAPSHWML DKLSGTYAPR PSAGPHKLRE SLPLVVFLRN RLKYALNGRE 
VKAILMQQHV KVDGKVRTDS TFPAGFMDVI SLEATNEHFR LIYDVKGRFA VHRITAEEAS
YKLGKVKKVQ LGKRGVPYVV THDGRTLRYP DPLIRANDTV KIDLATGKIT DFIKFDTGRL
VMVTGGRNLG RVGVIVHREK HEGGFDLVHI KDSLDNTFVT RLANVFVIGT EAGKPWVSLP
KGKGIKLSIS EERDRRRAQQ GL