Gene PICST_78873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_78873 
SymbolEXG2 
ID4839981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp383879 
End bp386317 
Gene Length2439 bp 
Protein Length438 aa 
Translation table12 
GC content43% 
IMG OID640391296 
ProductGlucan 1,3-beta-glucosidase precursor (Exo-1,3-beta-glucanase) 
Protein accessionXP_001385760 
Protein GI150866234 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2730] Endoglucanase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.161777 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
CCACCATGAC TCCGTTATTG TAAGGACAAG AAGCGACACT GGCACATCTC TAGCCCCTTC 
CAGACTTGTA CATGAACAAG CATAGAGATA CAATTGGAAA TGATCCTTTG TCTCTAGTGG
CTGGTTGCCA GTTCGCAGCA CACGAAAAAT AAAAAGCCAA CTTATCAAGC CTAAAATTTC
TTTGTGTTGA ATAAATCCAA CGCACACTCG CACCTTTTTT TTTTACCGTG TGGAACATTC
TCGGATTCCT ACCCAAGCAA CACCGATTGA AGGAGTGCCG TCGCCGGCTT GAATTTCACT
TGAAAACAGG TGCACACTCG CGTTCTAGAA ACAACAACCG AAGATTGTCA TCTCCTGTTC
ATATAAATAT ATAAGCACCC CCCGTCCAAC GTGGAAGAAC CCTTGTTCCA CTTTTTCTCA
CTGTTCGTTT ATATTCATAG ATTCAAATCC GTATACGGTA CACTACTAAG GCCCAGCCCT
CTTCTCATTT CATCTTCAGC CTTGTCGTGA GAACTCTATA GTTGCAACCT TCGACATCGC
CATAGCATTT CCTTGTTTCA TCCACTTCGT TTCAGCCGTA TTAATAGCCG CTGAGTAGAC
AAACCTGGCT CCTCTCTTTT CACTTGCAGC ATACAATTCC AGCTCCAGGA ATATCATAGC
TCGTTGACAA GACCGCAAAA TTATCGTCAC CTAGTGTTGG ACCGAACTCC CGTACGATTT
CATCAATAGC TCCTTGCTGC ATCAATTGTC GTAGATTGAT TCACAATTCT CGGATTCAAT
AAATTCTCCT AAAATAACAG GATTAATTTA GAATATTATC AGAATATTAT TTCCCGATAA
ATTTATTTTC TGGTGCATAC GTCATAAGGT GCGAACATAA CCTCCTTGCA CATTAACCTT
TTGACACCTG TACAGCAATA TGGTACAACT TACATCCATT GTCTCCTCCA TTTTGGTGTT
GTCACAATCT TTACTTGTGG CATCCGCCTC CATCAACAAC CCGCTCTTGG ATAACAATAA
CAACTTGAAG AAGTTGACGA AGAAGGGTGC CTCCTGGGAC TACCAAAATG ATGTCATCAG
AGGGGTGAAT TTGGGAGGCT GGTTCGTGCT TGAACCCTAC ATCACACCAT CTTTGTTTGA
ACAGTGGGAA AACTGGGGCG ACGACTCTCA GGTCCCTGTA GATGAATACC ACTACACTCA
AAAGTTGGGC AAATTGGTCG CTGGCCAGAG ATTAGATACG CACTGGAAGA CATGGTACAC
CGAGCAGGAT TTCTCAGACA TAGCTGCTGC AGGCTTAAAC TTTGTCCGTA TCCCAATCGG
CTACTGGGCT TTCCAATTGT TGGATAACGA TCCCTATGTT CAGGGCCAAG TTGAATACTT
GGACCAGGCA CTTGGATGGG CCAACAAGTA TGGCTTGAAG GTGTGGATTG ACTTGCACGG
TGCTCCAGGC TCTCAAAATG GTTTTGACAA CTCTGGTTTG AGAGATACTG TCCAGTACCA
ACAACCTAAC AATGTCCAGG TTACATTGAA TGTGTTGGAG CAGATCTTTG AAAAATACGG
TAACGGCGAG TATTCCAACT ATGTTATTGG TATCGAATTG TTGAACGAAC CTTTGGGCCC
TGTCTCGGAC ATGAACAACT TGAAGAACTT CTTGACCCAA GGCTACAACA ACTTAAGACA
AACTGGCTCC GTAACTCCCG TGATCATCCA TGATGCTTTC CAGGCTCCAG GTTACTGGGA
CAACTTCTTG ACCGTTGAAA ACGGTGACTA CTGGAGCGTC GTTATTGACC ATCATCACTA
TCAAGTGTTC TCCTACGGCG AATTAGCCCG TGATATCGAC CAACACATCT CTGTTGCATG
TAACTGGGCT TGGGATTCCA AGAAGGAATA CCACTGGAAC GTTGCTGGTG AATGGTCTGC
TGCCTTGACT GACTGTGCCA AGTGGCTTAA CGGTGTTGGT CGTGGTGCTC GTTACGCTGG
TCAATACGAC AACTCTGCTT ACATTGGTGA TTGTACTCCA TACCTTGACT TGGGAACCTG
GACTCAAGAT TACAAAACTA ACGTGCGTAA GTACATTGAA GCCCAATTGG ATGGTTTTGA
ACAGACAGGT GGTTGGGTCT TCTGGAACTG GAAGACTGAA AACGCTGTTG AATGGGATTT
CAAGAGATTG ACAGCTGCTC AACTCTTCCC ACTGCCACTC ACCGACAGAC AATTCCCTAA
CCAATGTGGT TTCTAAAGCA TCTAAAGAAT GATTTCAAAA ACAAAAGTTG AATTGGGTTC
AAGTGTTTGG TCTCAAATAC TGTTACACTA TAGACAACCT TTCTCAAACA CACTAGTTGC
TTTTCTCATT TTCGATCACA CAATCTTCAT TTCAGTTCTG GTTGTTTATT AATACATTAT
CTTACTAATT AATACACTAT TATTAAATTT ATTGTCTAG
 
Protein sequence
MVQLTSIVSS ILVLSQSLLV ASASINNPLL DNNNNLKKLT KKGASWDYQN DVIRGVNLGG 
WFVLEPYITP SLFEQWENWG DDSQVPVDEY HYTQKLGKLV AGQRLDTHWK TWYTEQDFSD
IAAAGLNFVR IPIGYWAFQL LDNDPYVQGQ VEYLDQALGW ANKYGLKVWI DLHGAPGSQN
GFDNSGLRDT VQYQQPNNVQ VTLNVLEQIF EKYGNGEYSN YVIGIELLNE PLGPVSDMNN
LKNFLTQGYN NLRQTGSVTP VIIHDAFQAP GYWDNFLTVE NGDYWSVVID HHHYQVFSYG
ELARDIDQHI SVACNWAWDS KKEYHWNVAG EWSAALTDCA KWLNGVGRGA RYAGQYDNSA
YIGDCTPYLD LGTWTQDYKT NVRKYIEAQL DGFEQTGGWV FWNWKTENAV EWDFKRLTAA
QLFPSPLTDR QFPNQCGF