Gene PICST_78871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_78871 
Symbol 
ID4840370 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp805279 
End bp806019 
Gene Length741 bp 
Protein Length114 aa 
Translation table12 
GC content40% 
IMG OID640391685 
Productpredicted protein 
Protein accessionXP_001385852 
Protein GI126138658 
COG category[R] General function prediction only 
COG ID[COG1075] Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.956921 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TATCAGGCTC CAAAATACCC AATTGTACTT TGCCACGGAT TTTCTGGTTT TGACAAATTA 
ACCTTTTTGC CGAGAATCTC CGCCTCTGAA AAGGCGGTAG AAGTAGCTAA AAACAACCTA
GAGAAGCTTC TTAATGAAGG TGTTCAGCTA GACTATTGGC ACGGAATCAA AGAAGCTTTA
GGGAATATTG GAAGCAAAGT TCTAATAGCT AAAGTTCCGC CATTTGGAAG GATCGAACAT
CGTGCTAGAA CACTTGAACA GTATATAATA CAGCAATGCG ATATTCTTCG AAAGCAAGAA
CTGAAATCTA CCATCTATCG ACATCTAGAT CTTCAAGATG GGCATTCGAG TGATAGATTT
CACACATTCA ATGAGATCAA TGAACCGATC AAAGTGAACA TGATAAGTCA CTCAATGGGA
GGTCTAGATA GTCGATACTT GATATCCAAG CTTCAAAAAG AGGATTCCCC AAAACCTTAT
AAAGTAGTCA GTTTAACCAC CATTGCTACA CCTCACCATG GATCAGAGTG TGCAGACTTC
GTGGAGAATT TAGTGGGGAA TAGTAAGATA TTGAGGTCAA TGTGTCCAGA AGCTATTTTC
GAATTGACCA CTTCATATGC TAAAAAGTTC AACGACGAAG TAGTTGACGA TCCAAGTGTC
AAATACTTTT CCTATGGGGC TAAGTTTGAT CCCAGATGGT TCAGTTTATT CAATCTCACG
TGGCACATGC TTCGATATGA A
 
Protein sequence
MISHSMGGLD SRYLISKLQK EDSPKPYKVV SLTTIATPHH GSECADFVEN LVGNSKILRS 
MCPEAIFELT TSYAKKFNDE VVDDPSVKYF SYGAKFDPRW FSLFNLTWHM LRYE