| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_73507 |
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| Symbol | RPA190 |
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| ID | 4840433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009047 |
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| Strand | + |
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| Start bp | 199362 |
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| End bp | 204405 |
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| Gene Length | 5044 bp |
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| Protein Length | 1644 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640391748 |
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| Product | alpha subunit of RNA polymerase I |
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| Protein accession | XP_001386054 |
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| Protein GI | 150866448 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.305254 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CTAACCAGCA ATGGATATCT CCAAGCCCGT GGGCTCTGAA ATCACCTCGG TGGACTTTGG
TGTGTTGTCG GACGATGAGA TCCGTAAATT GTCTGCCAAA CAGATCACCA ACCCCACTGT
CTTTGACAAC TTGGGCCACC CTATAGGCTC TGGGCTCTAC GATTTGGCAC TCGGAGCGTT
TCTCAGAAAT GTTTGTACTA CTTGTGGTTT GGACGAAAAG TTTTGTCCTG GCCATTTGGG
TCACATTGAG TTGCCTGTGC CTGTTTACAA CCCACTTTTC TTCAACCAAT TGTACATTTT
ATTGAGATCA ACTTGCTTGT ACTGTCACCA TCTCAAGTTG AATGCTTTGG AAGTGCACAA
GTACAAATGC GCTTTGCGTT TAATTCAGTA CGGGTTGTTG TTGGAAGTAG TAGAATTGGA
AAATATGTAT GCCAGGGGCC AGTCACACGA AGAAGACGAC GATGAAGACT CTTCCAGCGG
TTTAGATCAC AAAGCCAAAC AGGAGTTGAT GGACCGTAGA GAAGAGTTTG TGAACACTGC
TATAGCAAAA GCTCTCAGCG AAGGCAGAAC CAGCGAACTG GGAGTGATTA CTGCTACTGT
AGGCGAAGAA AGAAAGCATA CTGTCCATGA CTTCTACAAG AGATTGTTGT CCAGACCCAA
GTGTGACAAC TGTGGAATGT ATTCGCCTAC TTTCAGAAAA GATGGTTTCA CCAAGATCTT
TGAGAATTCG TTAACTGATA AACAGATCAC CAACAACAGA GTCAAGGGCT TGAACAGACC
CGACATGTTG CGAAACGGTG CAGCCACTTC AACCAATAGT ACATCATCTA GTTCTAGTGA
CATGCCCAAC ATCAAACATA AGGGTGGATC GAAGTACGTT TTATCATCTG AAATCAGAAA
CATCTTAAGG GCTTTATTTG TCAACGAACA AGATGTCTTT CAAATGGTTT TCCACTCAAG
ACCTTACCAA AAAGAGACAG TTGTAGCTGA TATCTTCTTT AGACAGGCTC TTTTGGTACC
TCCTACGAGA TTCAGATTAC CTTCCAAGTT AGGAGATGAA ATCCATGAAA ACGCACAGAA
CGAGTTGCTC TCCAATATCT TGAAAACTGC ATTATTGATC AGAGACTTGA ACGATCAGAT
CTCGTCCTTG GTCAAGGGCA AGATTTCTCT CGATGAGAGA AAGATCGTGT TCAACAGATT
GATGAACTCG TTCGTCACTT TGCAAAACGA TGTCAACGCC TTCATTGACT CTACTAAGAA
CCAGAACTCT CCAGCTGGAA AGGTTCCAAA CCCTGGTATC AAGCAGGCTT TGGAAAAGAA
GGAAGGTTTA TTCAGAAAAC ACATGATGGG TAAGAGAGTC AATTACGCTG CTCGTTCCGT
CATTTCTCCA GACCCCAATA TCGAAACTAA TGAGATTGGT GTTCCACCGG TTTTTGCTAA
GAAATTGACC TACCCCGAGC CAGTAACTGC TCATAACGCT GCTGAGTTGA GACGTGCCGT
CATTAATGGT CCGGACAAGT GGCCTGGTGC TATCCAGGTC CAAAACGAAG ACGGTTCATT
GATTTCGTTG ATTGGTATGA CGTTGGAACA GCGTAAAACC ATAGCCAACC AGTTGTTGAC
CCCATCAAAT GGTGCCACCA TACTCAATAA GAAGGTTTAT AGACATATCA AGAACCACGA
CGTGGTAATC ATGAACCGTC AGCCTACTTT GCATAAGGCC TCTATGATGG GCCACAAGGT
TAGAGTGTTA CCAGGTGAAA AGACCTTGCG TTTGCACTAC GCCAACACTG GTGCTTATAA
TGCCGATTTT GACGGTGACG AAATGAACAT GCATTTCCCA CAGAACGAAA ATGCTAAGGC
AGAAGCTTTG AACTTAGCTA ATACTGACTC TCAGTACATT ACACCAACAT CCGGATCTCC
ATTGAGAGGT TTGATCCAAG ATCACATCTC TGCCGGGGTT TGGTTGACTT CCAAAGATTC
TTTCTTCACC AGAGAAATCT ACCAGCAGTT GATCTATGGA TGTATCAGAC CAGAAGATGG
CCACAGCACC AGAAGCAAAC TCATTACTGT TCCCCCAGCT GTTTTCAAGC CACAGCCTTT
ATGGACAGGT AAGCAAGTAA TAACTTCTAT CTTGTTGAAT ATCACTCCAG ATAACGTTCC
AGGTATCAAC TTGGTGTCCA AGAACAAGGT CAAGAACGAG TACTGGGGCG AGGGATCCAA
CGAGAACGAA GTTCTTTTCA AGAACGGTGA ATTGTTGTGC GGTATCTTGG ATAAGTCGCA
GTATGGTGCT ACGCAATTCG GTATAGTCCA CTCTTTGCAT GAAGTGTATG GTGCTGCTGT
AGCAGGTAAA GCATTGAGTG TACTTGGTAG ACTTTTCACG AATTACATCA TGATGACAGC
CTTCACATGT GGTATGGACG ACTTGAGACT TACCGAGGAG GGTAATTCTT GGAGAAGAGA
CATCTTAAAG CAGTCTGTAG ATATCGGTAG AGTTGCTGCT GCGGAAGTCA CCAATTTGGA
CAGTAAATCT ACTGGAAACC ACGATCCTGA GTTGTTGAGA CGTTTGGAAG AGATTTTGCG
TGATGATAAC AAGTTGGGCA TTCTTGATGC TGTTACCCAG TCCAAGGTGA ATACCATCAC
TTCTCAAGTC GTTGCCAAGT GTGTTCCAGA TGGAACTATG AAGCGTTTCC CATACAACTC
TATGCAAGCT ATGGCTTTGT CTGGTGCCAA GGGGTCCAAT GTCAATGTTT CTCAAATCAT
GTGTCTTTTA GGGCAACAGG CCCTTGAAGG TAGAAGAGTA CCGGTTATGG TTTCTGGTAA
GACTTTACCT TCTTTCAAGC CATTTGAGAC TGATGCCAGA GCCGGTGGCT ACATCAAGGG
TCGTTTCTAC TCTGGTATCA GACCTCAGGA GTACTATTTC CATTGTATGG CTGGTCGTGA
AGGTTTGATC GATACAGCTG TCAAGACATC TAGATCAGGT TACTTGCAGC GTTGTTTGAC
CAAACAATTG GAAGGTGTCC ATGTCAGTTA CGACAACTCG GTCAGAGACG GTGACGGCAC
CTTGATCCAG TTCTTGTACG GTGGAGACTC TATTGATACG ACCAAACAGT CTCACATGAA
CCAGTTTAAG TTCTGTGCTG AGAACTACGA TGCCTTGTTG GCCAAATACA ACCCTGGTGA
ATTGACCCAC CATTTGGATA CCGAAACTGC CTTACACTAC TCCAAGAAGG TTCGTAAGAA
CATGAAGAAA CAAGGCAAAT TGCCTCACTA TGAACAGCAG ATCAAGTACG ACCCTGTCTT
GTCGGTGTAC AACCCAGCCA AGTACTTGGG TTCTGTCTCT GAAAAATTCC AAGAGAAGTT
GGACGACTTC GTCAAGGACA ATGAAGACAT TTTCGCCAAG TCAAAGGAAG AAGCCAAGTC
TACTGGAAAG TTGACGGAAA AGAAGTTCAG AGCATTGATG CAATTGAAGT ACATGAGATC
ATTGATCAAT CCCGGTGAAG CTGTGGGTAT CATTGCCTCT CAGTCTATTG GTGAACCTTC
TACCCAGATG ACATTAAACA CTTTCCATTT CGCTGGTCAC GGTGCTGCCA ACGTGACGTT
GGGTATTCCT CGTATGAGAG AAATTATTAT GACAGCTTCT GCTGCCATCA AGACACCACA
GATGACTTTG CCTATTTTGG ATGATGTGTC TGACGACCAG GCTGATGCCT TCTGTAAGTC
TGTAGCAAGA GTTGTGATGT CGGAATTCAT TGACAAGGTT CTCGTGACTG AAACCACGTC
TACGTCCGAA GATGGAACTA ACTCCAGATC GTACATCATC AACTTGAAGT TCTACACACG
TAAGGAGTAC GAAGAGGCCT ATGACATCTC TCAGGATCAC TTGGAAGACG TCATCACGAG
CACATTCTTG CACGCTTTAG AAGCCCAGAT CGTCAAGGAA GTCAAAAAAC AGAAGAGACC
AGACTCTTTG CCTAATATCG GAAAGTCTGC TGGCAAGACT GATTTGGAAT CGATTTCTGC
CAAGGTTACA GAAATCAACG ACGATGAAGA TGCCTCAGAT GAAAAATCTA GAAACAAGGG
CAAAGAAGCT GTCTCTTACG ACGGTCCAGA TGATGAGGAA ATTGAAACTA TGAAGAAGGC
CGAAGAAACC TCGGATGAAG AGATGGTTGA CGATGATGAT GATGATGACG ACTCGTCTTC
CTCTTCTGAA GATGAATCCT CTGACGAAGA AATGGAAGAA GAAAAGAACA CAACAAAGGA
ATTATCTAGA ACTGCTAAGG ACCGTCAGGC CGAGGTTATT TCTTCTCACA ATATGGTGAC
GAAGTTTGAC TTCGATGATG AAAACGGTGA ATGGTGTGAA TTCAAATTGG AGTTGAATGG
TAACGAAACG CAAAAGTTGT TGATGGTTAA CATAGTCGAA GACTTGTGCC GTAAGGTTGT
TGTTCGTGAG ATTCCACAGA TTGGTCGTTG TGTTCATCCA CAACCAGATG CCAGTGGTAA
GAGAATCTTG ACCACTGAAG GTGTCAACTT CAGAGCCATG TGGGATCAAG ATGATTTCAT
TGACGTCAAC AACATCACCT CTAACGACGT TGCTGCTGTG TTGAGAACAT ACGGTGTTGA
AGCTGCTAGA AACACTATTG TCAACGAAAT CTACAGGGTC TTTGACACCT ATGGTATCAG
TGTGTCCAGT CGTCATTTAG ACTTGCTCGG TGATATGATG ACTAGAGAGG GTACCTACTT
GGCTTTCAAT AGACAGGGTA TCGACTCTTC TACCTCTGCA TTCATGAAGA TGTCGTATGA
AACCACCTGT CAATTTTTGA CCAAGGCCGT TTTGGATGGT GATCGTGAAG ACTTGGAGTC
ACCATCTGCT CGTATTGTTT TAGGTAAATT GTCCAACGTT GGTACTGGTT CGTTCGATGT
TTTGGCACAA TTGGGTAAAG TGTGATTTCC ATTTGTGAAC ATGTTTTCAT TTGTACATTA
ATTTGTACAT TGTATTCGTA TTTTGTTTTT TGCATATAGA TTAATATAAA AAGTATAGTA
TCTT
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| Protein sequence | MDISKPVGSE ITSVDFGVLS DDEIRKLSAK QITNPTVFDN LGHPIGSGLY DLALGAFLRN
VCTTCGLDEK FCPGHLGHIE LPVPVYNPLF FNQLYILLRS TCLYCHHLKL NALEVHKYKC
ALRLIQYGLL LEVVELENMY ARGQSHEEDD DEDSSSGLDH KAKQELMDRR EEFVNTAIAK
ALSEGRTSES GVITATVGEE RKHTVHDFYK RLLSRPKCDN CGMYSPTFRK DGFTKIFENS
LTDKQITNNR VKGLNRPDML RNGAATSTNS TSSSSSDMPN IKHKGGSKYV LSSEIRNILR
ALFVNEQDVF QMVFHSRPYQ KETVVADIFF RQALLVPPTR FRLPSKLGDE IHENAQNELL
SNILKTALLI RDLNDQISSL VKGKISLDER KIVFNRLMNS FVTLQNDVNA FIDSTKNQNS
PAGKVPNPGI KQALEKKEGL FRKHMMGKRV NYAARSVISP DPNIETNEIG VPPVFAKKLT
YPEPVTAHNA AELRRAVING PDKWPGAIQV QNEDGSLISL IGMTLEQRKT IANQLLTPSN
GATILNKKVY RHIKNHDVVI MNRQPTLHKA SMMGHKVRVL PGEKTLRLHY ANTGAYNADF
DGDEMNMHFP QNENAKAEAL NLANTDSQYI TPTSGSPLRG LIQDHISAGV WLTSKDSFFT
REIYQQLIYG CIRPEDGHST RSKLITVPPA VFKPQPLWTG KQVITSILLN ITPDNVPGIN
LVSKNKVKNE YWGEGSNENE VLFKNGELLC GILDKSQYGA TQFGIVHSLH EVYGAAVAGK
ALSVLGRLFT NYIMMTAFTC GMDDLRLTEE GNSWRRDILK QSVDIGRVAA AEVTNLDSKS
TGNHDPELLR RLEEILRDDN KLGILDAVTQ SKVNTITSQV VAKCVPDGTM KRFPYNSMQA
MALSGAKGSN VNVSQIMCLL GQQALEGRRV PVMVSGKTLP SFKPFETDAR AGGYIKGRFY
SGIRPQEYYF HCMAGREGLI DTAVKTSRSG YLQRCLTKQL EGVHVSYDNS VRDGDGTLIQ
FLYGGDSIDT TKQSHMNQFK FCAENYDALL AKYNPGELTH HLDTETALHY SKKVRKNMKK
QGKLPHYEQQ IKYDPVLSVY NPAKYLGSVS EKFQEKLDDF VKDNEDIFAK SKEEAKSTGK
LTEKKFRALM QLKYMRSLIN PGEAVGIIAS QSIGEPSTQM TLNTFHFAGH GAANVTLGIP
RMREIIMTAS AAIKTPQMTL PILDDVSDDQ ADAFCKSVAR VVMSEFIDKV LVTETTSTSE
DGTNSRSYII NLKFYTRKEY EEAYDISQDH LEDVITSTFL HALEAQIVKE VKKQKRPDSL
PNIGKSAGKT DLESISAKVT EINDDEDASD EKSRNKGKEA VSYDGPDDEE IETMKKAEET
SDEEMVDDDD DDDDSSSSSE DESSDEEMEE EKNTTKELSR TAKDRQAEVI SSHNMVTKFD
FDDENGEWCE FKLELNGNET QKLLMVNIVE DLCRKVVVRE IPQIGRCVHP QPDASGKRIL
TTEGVNFRAM WDQDDFIDVN NITSNDVAAV LRTYGVEAAR NTIVNEIYRV FDTYGISVSS
RHLDLLGDMM TREGTYLAFN RQGIDSSTSA FMKMSYETTC QFLTKAVLDG DREDLESPSA
RIVLGKLSNV GTGSFDVLAQ LGKV
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