| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_72872 |
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| Symbol | HMG1 |
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| ID | 4840098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | - |
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| Start bp | 459901 |
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| End bp | 463684 |
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| Gene Length | 3784 bp |
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| Protein Length | 1047 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640391413 |
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| Product | 3-hydroxy-3-methyl-glutaryl coenzyme A reductase (HMG-CoA) |
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| Protein accession | XP_001385774 |
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| Protein GI | 150866245 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1257] Hydroxymethylglutaryl-CoA reductase |
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| TIGRFAM ID | [TIGR00533] 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACTCTAT TGTACATACT CTCGTGCTCG TGTCTACATT GTTTGTAGCC AGTATTGAGA
TTGCCATACT ACTAGGTATG TAATTGTCGC TGAGCAGCGT CGACTTCTTC TGTCGGTAAC
TCGTCCCAGA ATTTTTCTAC CTATACGTTT GAGCGGTTGG GTACGAATAA GAATAAAGTA
CTAGAAGGAC ACCAAAATTC GCCTCCTTAA AATCTCTCGA CACCAATGCT CGAGAAACTT
CTCTGGAGGA CAACTTTGGC TTCACGGTTT TTCGTCTTGA ACTTGTTCGC GTCGATTTAT
CATTCTCGCA CTCTCGTCTG AAAAATTCTG AGATTTCAGT ATCTGAAAAT TCTGAAATCA
TACCATTGAT ACAATGGTCC CATAGAATTT CTACTAACTC TTCTAGCTCA GAATGGTTCT
TGGCTTCATA ACCAGGGCCA CTAGCGCCTT GGCCAGGACT TCGGCCCATC GCCCAATACA
TTTCATCATC ATCACCTCAT TGCTAGCATC GATTGCTTAC TTATCAGTAG TTGACGAATA
TATTCCAGAG AACTTCAGCG ATACAGACAT TGGGACCTCC TACTACCACC CGGCAGGCAG
AGCGGATTAC AAGAACTGGA TCAAAATCGA CAATGCCTCG GAATACCCAA AAGCTAATCA
TGTCACAGTG GTTCCTTTGA GATTCAAGAG AGTTCTTCAC AGTGAAATAC CAACTGTTGA
AAACACGTTC CAAGGCTTAC AGCAAAACGA ACGTGTCCTC ATTGTTGATT CTGATGTTGT
AGACTCGGCC TTGCAGTCTA TCGACAAGAT CTCCTACAAC GGTCTTACAT GGAGAGCCAG
AAACAACAAC AGAATTATGA AATATTATGA GTATATCCGT ACCAGTCTTC TGAAAATCAG
AAGCTTGATG CAGAATGCCG AAAACTTCGA CATCACCTTG ATTACCGTCG CTTATCTTGC
CATGTGGTAC ACTTTAATCA AGGTTTTCGT CGATATGAGA CTCGTAGGCT CCAAGTTCTG
GTTAGCCTTT TCAACAATTA TCTCTTCCAC TTTTGCTTTC CTCTTTGCCT TAGTGGTTAC
CACTAAGGTA TTGGATACCA AGGTTCCATT GATAAGTATT TCAGAAGGTA TTCCCTTTTT
GGTAGCCATT ATTGGGTTCA AGCACAAGGT CTCTATTGCT TCTGCTGTCC AGACAGCATC
CAATACCTCA GAAGATGTGA GAACCATCGT GGCTAGAGTA ATCTCATCCC ACACCGTTAG
TATGTTGAGG GACCATGTAG CCGTCATTGG AGTTCTTCTT GCATGTGCTT CTTACGGCTC
TCATTTGGCT GGATTGAGAA ACTTCTGTAT TTTGAGTTCT TTGATCTTGT CGATCGACTT
AGTTTTGGTC TACACCTTCT TTTCTGCTAT CTTGGCTTTG AAAGTCGAAA TCAACAGAGC
TCGTCGTACT GAAGACTTGA AAGAAGCTCT TGAAGAAGAA GGTATTTCCT CGTTGATTGC
TCAAGACGTG GCTCTTCAAT CTTCCAATAT CGAACACCCA AATGAAAAGA ACTTTTTTGC
CTCAGATGAC TCTTCTATTG TCTCTTTCAA GGTAGCTATG ATTCTTGGGT TCTTGGGGTT
CCATGCTTTC TGGTTAGGAA GCTCATGGTT GTATAACTCA ACTGGAGATG CTACACTCTC
TGTGTTGGAC ACTGCTCCAC AGTTAACTAA ATCTACTGCT AAGTATATCA CCATTGGTTC
TAAGGGTACC ATTGTAACCA TCTTACCCGC CAGAATCTAC TTGCCATTGG GATATCTAGT
TCTTACTGAA GACTTTGTCT TGTCAGTTTT GGAAAAGATC AGTTATGCCA TACGAGACAA
CCTCATTTCC AAGTTCCTCT TGTTCGGATT TGCTATTTCC ATCAGTGTCA ACGCATACTT
CTTAAATGCA TCTCGTTACC AGGTTTCTGC CACTACAAAG CTCATACAAA GAGAATTCTC
TAGACCACAA TTGAGCGAAA AGTCCAAGAC TCAAACTGTG ACATCTGCGC AAGCCCCTAG
AGTTTCCAAA ATTGACACCA AAGAGTCGTA TGAAGACTCT TCTAGTGAAG AATTGGAAAT
CAAGGTCCCT GCTAAGCAAT TGCCATTGGA AGAATGTATT GAAATCATGA AGGATGGAAA
GGTCAAGACT TTGAATGATA ACGAAGTATC GTCCTTAGTG GTTTCTGGAA AATTACCATT
ATATGCTTTA GAGAAGCAAT TGGCAGATAA CACTAGGGCT GTTGCTGTTC GTAGAAAGGC
TATTGCCAAG TTAGCCAATG TTCCTTCGTT AGATTCCGGT CGTTTGCCAT ACAAGCACTA
TGATTACGAT CGTGTGTTTG GTGCCTGTTG TGAAAATGTT ATTGGATTCA TGCCTATTCC
AGTAGGTGTA GCCGGACCTT TGATTATCGA CGGTAAGCCA TATCATATTC CTATGGCCAC
TACTGAAGGT TGTTTGGTTG CTTCTACTAT GCGTGGTTGT AAAGCCATCA ATGCTGGTGG
AGGTGTTCAG ACTGTGTTGA CCAGAGATGG TATGACCAGA GGTCCATGTG TCTCGTTTCC
ATCTTTGGCA AGAGCTGGAG CTGCTAAATT GTGGCTTGAT TCTGAAGAAG GTCAACTGAC
TATCAAAAAG GCTTTCAACT CTACTTCCAG ATTTGCGAGA TTGCAACATA TTCAAACTGC
CATGGCTGGT GATTTGTTAT TTATTCGTTT CAGAACCACC ACTGGTGATG CAATGGGTAT
GAACATGATC TCCAAGGGTG TGGAATACTC CCTTAAGTAC ATGGTTGAAG AGTGTGGATG
GGAAGATATG GAGATTATCT CGGTCTCTGG TAACTACTGT ACCGACAAGA AGCCTGCTGC
CATCAACTGG ATCGAAGGGA GAGGTAAGTC TATTGTGGCT GAAGCCAGAA TTCCATCTGA
AGTCGTCAAG AAGGTTCTTA AGTCTGATGT GGATGCTTTG GTTGAATTGA ACATATCCAA
GAACTTGATT GGTTCTGCCA TGGCTGGTTC AGTTGGTGGA TTTAATGCTC ATGCTGCCAA
TTTAGTCACA GCTGTGTTTT TGGCGTGTGG TCAGGATCCA GCACAAAATG TCGAATCCTC
CAACTGTATT ACCTTGATGA AGAGAGTTGG AGATGATTTG CAGATTTCTG TTTCTATGCC
TTCTATCGAA GTTGGCACTA TCGGTGGTGG TACTATCTTG GAGCCACAAG GTGCCATGCT
TGACTTGTTA GGAGTCCGTG GCCCACACCC AACTAATCCT GGTGATAATG CCAGACAATT
AGCTCGTATT GTTGCATGTG CCGTGTTGGC AGCTGAACTT TCTCTTTGTT CTGCTTTAGC
TGCTGGCCAC TTGGTTCAAT CCCATATGCA ACACAACCGT AAAGGTGCTG CTGCCACTCC
TGCTGCTCCT GCTGCCAACG GTTCGGCCAA TGGATCGGCC AAGGCACAAA CCAAAGCTCC
AAAACCCAAC GGAGCTGCCA ATGGAAATGA TTTAAAGCGT CTTAAGGAAG GTGCTGTCAC
TTGCATCAAG TCCTGAAAAG AGAAAATCAA AAATTAACTA TAATGTAATA TATTCGGTCT
TATCTTCAAA CCGCTATTCG TCTTTCCAAA AGGATTAGAA TTTGAAAACT AAATACGAAA
AACCCAAGGC GAGGATCCTC CAAATCATTT AGCTTGCTAT GTTGTTTGCA TTATTTATAC
AAGGTTTTCT TTATATCTTT ATTTCATAAT ACCTCTTTTG CATTAATAGA TATCAACATA
TCGT
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| Protein sequence | MVLGFITRAT SALARTSAHR PIHFIIITSL LASIAYLSVV DEYIPENFSD TDIGTSYYHP
AGRADYKNWI KIDNASEYPK ANHVTVVPLR FKRVLHSEIP TVENTFQGLQ QNERVLIVDS
DVVDSALQSI DKISYNGLTW RARNNNRIMK YYEYIRTSLS KIRSLMQNAE NFDITLITVA
YLAMWYTLIK VFVDMRLVGS KFWLAFSTII SSTFAFLFAL VVTTKVLDTK VPLISISEGI
PFLVAIIGFK HKVSIASAVQ TASNTSEDVR TIVARVISSH TVSMLRDHVA VIGVLLACAS
YGSHLAGLRN FCILSSLILS IDLVLVYTFF SAILALKVEI NRARRTEDLK EALEEEGISS
LIAQDVALQS SNIEHPNEKN FFASDDSSIV SFKVAMILGF LGFHAFWLGS SWLYNSTGDA
TLSVLDTAPQ LTKSTAKYIT IGSKGTIVTI LPARIYLPLG YLVLTEDFVL SVLEKISYAI
RDNLISKFLL FGFAISISVN AYFLNASRYQ VSATTKLIQR EFSRPQLSEK SKTQTVTSAQ
APRVSKIDTK ESYEDSSSEE LEIKVPAKQL PLEECIEIMK DGKVKTLNDN EVSSLVVSGK
LPLYALEKQL ADNTRAVAVR RKAIAKLANV PSLDSGRLPY KHYDYDRVFG ACCENVIGFM
PIPVGVAGPL IIDGKPYHIP MATTEGCLVA STMRGCKAIN AGGGVQTVLT RDGMTRGPCV
SFPSLARAGA AKLWLDSEEG QSTIKKAFNS TSRFARLQHI QTAMAGDLLF IRFRTTTGDA
MGMNMISKGV EYSLKYMVEE CGWEDMEIIS VSGNYCTDKK PAAINWIEGR GKSIVAEARI
PSEVVKKVLK SDVDALVELN ISKNLIGSAM AGSVGGFNAH AANLVTAVFL ACGQDPAQNV
ESSNCITLMK RVGDDLQISV SMPSIEVGTI GGGTILEPQG AMLDLLGVRG PHPTNPGDNA
RQLARIVACA VLAAELSLCS ALAAGHLVQS HMQHNRKGAA ATPAAPAANG SANGSAKAQT
KAPKPNGAAN GNDLKRLKEG AVTCIKS
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