| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_68263 |
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| Symbol | XYC1 |
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| ID | 4840754 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009047 |
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| Strand | + |
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| Start bp | 194865 |
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| End bp | 198809 |
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| Gene Length | 3945 bp |
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| Protein Length | 1191 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640392069 |
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| Product | hypothetical protein putative xylanase/chitin deacetylase |
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| Protein accession | XP_001386053 |
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| Protein GI | 150866447 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5038] Ca2+-dependent lipid-binding protein, contains C2 domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTTTAAAAGC CTATCACATT TGGAGGATTA TCCATACATT CAATTGTCCA CACTCAATTG
GGTTCAGACC TCAACATGGC CACTACTACC ACGAGTGCAG TAAGTTTTTG GTGAAATTTT
GCTTAGTGAA ACAGCATAGA ATTTGAACAA GATGACAACA TGATGAGCAA ACAAGAATTC
AATTGATATC CAAGACTTAT TAGTCTGGTA TTAATGCAAC TGAAATAGCC TACGGATATC
ATCTAGGTCG TATATTTCAT CATATCAATT GACGAATGAT CACAATGTTG CTCTCAAATC
TTCATAGTTT TCAAATTCGT TTTTTTATAG TCTTCTTAAT TCATACTAAC CATTCAGCCC
ACCGACAGCG TTCAGGCGCC CGTTCAGGTG TCAGTTGATC AACGTGAGTT GATTGATAGT
GAAAAAAACA ACTCTGTCTC TACCAAGCAG TCGGAGCTCA CGAATAAGAC AGCCCAAAAG
CAGCTTCCTA ACGTTCAAAC TTCACTTAGT TTGCAGCCCA GTGAGGATCT TGACATTACC
AACGTGAAGA CTAAACCTCT TGCTAGACAA CCACAGGAAC CAACGTACCG AGGTTGGAAA
GAGGTGGGTC ATTGGGAACA CGACGATGCC TTGACGGAAG ACGACCAAGC CGTGGATTTA
TTACTGAAGC CTTCGTTGTT TGACCAATAT CTTCCCCCTG TTGTATTTGG CGACTGGTAC
CACAATGTGG GCTATTTGGT CGTTGCAGCA CTTGTGTCTT GGATCATTGG CTGGTTCAAA
TTCTCTGTGG CTCCTCTTTT CTTCGTCATG CTCGTGTTTT CTGTATTGTA CCGTGCATCT
GTCAAAAAGT ACAGAATGCT TCTCAGAGAA GAAGCGCAAA GAGAATTCTC TGTAAAAACA
ATAGAAACGG ACTACGAGTC CATGGACTGG TCTAACACCT TCTTAGAAAA GTTCTGGGTT
TACTTGGAAC CTTCAATCTC TCAGATAGTC TGCGAACAAG TCAACCCCAT TTTGGCTTCT
TCGCCTGCTC CAGCTTTTGT GAAGAAGTTG TGGATCGACA GCTTTAGTGC CGGTACCAAA
CCTCCCCGTA TAGATTGCGT GAAGACCTTA CCTGGAACCA GTGATGATGT CGTTGTTATG
GACTGGGGTT TCTCGTTCAC TCCAAACACC TTAGCTGACG CCAACACTAA GCAGTTGAAG
AACAAGGTCA ATCAGAAGCT TGTAGTCAAA GCCGAGGTAT TTGGCTTTAC AATTCCTGTT
CTTGTTGCTG ATTGTGCTTT CAAGGGTCTT GCCAGGATTA GATTGAGAAT GATGTCATCT
TTTCCCCATG TAGAAACTAT CAACGTGACT ATGTTGGAGG CTCCGCAGTT TGACTTCAAC
TCCAAGATTC TTACCGAAAA CAACGTCTTG TGGGAGTTTT TGGCCCTTCC TGGATTGTAT
CCTTTCATCA ATGAGATGGT CAAGAAATAC GTAGGTTCTT TGCTCTTTGC TCCTTTATCC
TTCCAATTGA ATCTTCAGCA GTTGTTGGCC GGTAACGCTT TCGACTCTTC TATAGGTGTC
TTGTCTATCA CTGCGGACTC AGCTAGAGGG TTGAAGGGTT TCAGCACTAT CGGTAATACC
TTGGACCCAT ACTTGACGTT TGGATTCAAG AAGGACGTTT TGGCTAAGAC TTCTACCAAG
GATGATACCA ACCACCCAGT GTGGAAGGAG ACTTACCAGA TCTGTGTTAA ATCATTAACC
GAGCCCTTGA ATATCACTGT CATCGATTTC AATGAGTTCA GAAAGGATAG ACAAGTGGGA
ACGATTCAGT TTGATCTTGA ATCCTTCTTA GACAATCCTA AGCAAAGCAA CATCACTGCT
CCTTTCATAA GAAACGGTAA GCCTGTCGGT GAATTGGTAT TTGGATTAAA CTACATGCCT
ACCTTAGAGG CCGAAAGGCT GGCTGATGGT GCAGTGATTC CTCCACCAGA CTTGAACACC
GGTATTGCAA GAATTGAAAT AGCTGAAGCC AGACATTTGA AGTCGGGCGA AAAGGCCGCT
TCTGCTTTTG CTGAAATTCA TTTCAACAAT GAGAAGGTAT TGACCACGAG TGTCCAAAAG
AAGACGAACG CTCCTAGCTG GGGTGATAAG ATCGAAAAAA TAGTAGACAA CCGTGCCAGA
TCCAAGGTGA AGATTGTAGT CAAGGAAAAA GGTGGAAAGA CCTTGGGCCA AATCCATACC
TCATTGAATG AACTCATTGA TGCCACTCAG GTTGACCAGA CTTGGTTTGC TTTGGCTCAA
GGAGGTGAAG TTAGAATCAA TGCCTCCTGG AAACCAGTTG CTCTTTCCAA CAGTAGTGGA
TCAAGCGGTT ACGCCGCTCC TATTGGAGTT GTCAGAGTCA GTATCGAAAA AGCAGAAAAC
TTGAGAAATT TGGAAGCCAT TGGCAAGGTT GATCCTTATG CGAGAATCTT GGTTAATGGG
TTCCAGAGAG CTAGAACCGT TGCTTGTGAT TCGACTTTGG ATCCAACCTG GAACGAAGTA
CATTATATCT CTGTCACTTC TCCTAACCAG AAGTTAACCA TCGATGTGAT GGATGTCGAG
AAGACTTCAG CAGATCGTAC TTTGGGTTCA TTTGACGTCA GATTGAACGA TATCATCCGT
AAGGATGAGA CCGGAAAGTA CACGGAGCAC ATCGACCACG GCAAGAGACA CTCTAGGTTG
ATCCATAAGA AAGGGCCAAA GGGTGTTGTG ACCTATTCAT TGTCTTTCTA TCCTGCACTC
CCTGTTATGA CCTTAGAAGA ATGTAAGGAA GAAGAGGAGT TCAAGAAACA GAAGGAGGAA
GAAAAGGCTA AGAAGCTTGC TGAAAGTCAA AAAGAAGGAA AAGAGGCTCC TGTAGAAGAA
GAAGAAGAAG AAGTAAACGA ATTCAGTTCG AAATTAAAGT TGACTTTACC AGAATTGCTC
CAGCACAACA GTGGTATCTT TGTCTACGAA GTGTTGGACG CTAAGCTCAG TAAGGACGAC
GTCTATCTTC AGGCCTTCTT CGACAGCCAT GGCTACCACG ACTTCGTTTC GCAGAAGTTG
GAGAAGAAGC AAGTCAAAGT AGCTGCTACT GGTGATGTAG CCATCACGGA GCTTGAATGG
TCACAAGCCT GTTTTAGAAT CACCAAGGAC AAGAAGGACA ACCGAGCAGA GAAGTGCGTA
GCTGAAGTCA CCATTCCTAC TATGCAGTTG TTAAAGAATG CCTACAACAA GCCTACGCAA
CTCCAATTGA CTGGCGGCGG TGAACACAGC ACAATTACTG TCCAGTGCTC GTGGATACCA
TTGATCTATG AACATGGAAT CCCAGTCCAG GATTCCAGAA ATAATTCTGG AAAGTTGACC
GTGCAAGTTC TTCGTGCCGA AAACTTGATT GCCGCAGACA GCAATGGTAA GTCTGATCCA
TTTGTCAGGT TATACTTGAA CACAGACAAG GAAGAATTCT TGAAAACTAA AAAGGTGAAG
AAAACTCTCA ATCCAACATG GAACGAACTG GGTGTAGTCA CCGTAGCCAA TAAGCAGGAC
GCCGTTATCA AGGTAGTTGC AATGGACTGG GATATTGGTG TAGAAGCAGA TGACTTACTT
GGTATTGGTT ATGCCCAATT GTCTGATGTA GACTTTGAAC ACGGAACCGA ACTTAAGGTT
CCATTGGAGG CCGAAGACGG AGGAGACGGC GGTAATGTTT ACTTGAAATT TTCGTTTGTG
CCAGAAGTCG TCATTAACGT TAGAAGAGCT AGTACTACCA ACATTGGAGG TGCCATTGGT
AGTGTAGGTA ACGTTGGCAT TGGTGCTGGC AAGGGAGTCG TCAAGGGTGT TGGTAAGGGA
CTCGGTGGAG GTGTCAAAGT ATTCAGAAAA GGATTGAAAC TCGGCAAGCT GCTGGCCGAT
AAAGATTAGT CTTGTATTTA TATTTTTATT AAATTTTCAT TGAAA
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| Protein sequence | MATTTTSAPT DSVQAPVQVS VDQRELIDSE KNNSVSTKQS ELTNKTAQKQ LPNVQTSLSL
QPSEDLDITN VKTKPLARQP QEPTYRGWKE VGHWEHDDAL TEDDQAVDLL SKPSLFDQYL
PPVVFGDWYH NVGYLVVAAL VSWIIGWFKF SVAPLFFVML VFSVLYRASV KKYRMLLREE
AQREFSVKTI ETDYESMDWS NTFLEKFWVY LEPSISQIVC EQVNPILASS PAPAFVKKLW
IDSFSAGTKP PRIDCVKTLP GTSDDVVVMD WGFSFTPNTL ADANTKQLKN KVNQKLVVKA
EVFGFTIPVL VADCAFKGLA RIRLRMMSSF PHVETINVTM LEAPQFDFNS KILTENNVLW
EFLALPGLYP FINEMVKKYV GSLLFAPLSF QLNLQQLLAG NAFDSSIGVL SITADSARGL
KGFSTIGNTL DPYLTFGFKK DVLAKTSTKD DTNHPVWKET YQICVKSLTE PLNITVIDFN
EFRKDRQVGT IQFDLESFLD NPKQSNITAP FIRNGKPVGE LVFGLNYMPT LEAERSADGA
VIPPPDLNTG IARIEIAEAR HLKSGEKAAS AFAEIHFNNE KVLTTSVQKK TNAPSWGDKI
EKIVDNRARS KVKIVVKEKG GKTLGQIHTS LNELIDATQV DQTWFALAQG GEVRINASWK
PVALSNSSGS SGYAAPIGVV RVSIEKAENL RNLEAIGKVD PYARILVNGF QRARTVACDS
TLDPTWNEVH YISVTSPNQK LTIDVMDVEK TSADRTLGSF DVRLNDIIRK DETGKYTEHI
DHGKRHSRLI HKKGPKGVVT YSLSFYPALP VMTLEECKEE EEFKKQKEEE KAKKLAESQK
EGKEAPVEEE EEEVNEFSSK LKLTLPELLQ HNSGIFVYEV LDAKLSKDDV YLQAFFDSHG
YHDFVSQKLE KKQVKVAATG DVAITELEWS QACFRITKDK KDNRAEKCVA EVTIPTMQLL
KNAYNKPTQL QLTGGGEHST ITVQCSWIPL IYEHGIPVQD SRNNSGKLTV QVLRAENLIA
ADSNGKSDPF VRLYLNTDKE EFLKTKKVKK TLNPTWNESG VVTVANKQDA VIKVVAMDWD
IGVEADDLLG IGYAQLSDVD FEHGTELKVP LEAEDGGDGG NVYLKFSFVP EVVINVRRAS
TTNIGGAIGS VGNVGIGAGK GVVKGVGKGL GGGVKVFRKG LKLGKSSADK D
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