| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_68232 |
|---|
| Symbol | VWF1 |
|---|
| ID | 4840281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | + |
|---|
| Start bp | 1687800 |
|---|
| End bp | 1694944 |
|---|
| Gene Length | 7145 bp |
|---|
| Protein Length | 2303 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640391596 |
|---|
| Product | hypothetical protein containing von Willebrand factor and highly repetitive sequences |
|---|
| Protein accession | XP_001385681 |
|---|
| Protein GI | 150866177 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTCC GCAAGTTCAT AACGGTGGCA GTTTTGCTGT TGTCGAGCTT AGTAACTGCA
CAAGAAATAA CTGAAAACAC TGTCGACAGA GGGACCATTA ATCTTGGAGT CGGAGACCTT
GATATCGACC CAGGTGTCTA TTACTCAATT GTAGATGTGG CTCTTGTTGC CTTGGTTGGA
GGGCTTGATG TGGGAGCCGG TTCTGGATTT TACGTCACAG GTACGAGCCC TCTTTTAGGT
TCCACTGTCA CTCTTACAGC TCCACTTGGA ACGTTAGTGA ATAATGGTAT AGTTGCGTTT
AACTCAATTC GTTCAAGTCT TACAGGTACA GGCTATAGTC TTGGTGGGGC TTCATTTACA
AACAATGGGG AAATGTATTT CGGAGGAAAT GGTTTAATTT CTGCATTACC AAATGTTAGT
CTTACTGCCC CAGATTTCAC CAACAGTGCC GGCGCTTTGT TGGTTTTCTA CCAATCTACA
AGAGGCTCTG GTACTGTTGT ATTGGGAGCT GTGACGCCAA TTACAAATGA TGGTCAGATC
TGTTTCTATA ATGAAGTTTA CCAACAGACC ACTTCAATTC AAGGTGGTGG TTGCATGACT
GCTAATCAAG ATTCAAGTAT TTATCTTACA TCTCTCCTCA ATACTGTTGA TCAAGATCAA
ACCTTCTACT TGGCAGATTC GGAATCCACG CTCCAGACAT CTCCGATTAC TTTGTCGGCA
GACACCCCTA TTGTTGTAGG AGGTTTTGGT GGAGGGAATG CTCTTGGTTT GGATACTGCT
CTTAGACCAA ATCTCTTGGG TGGGCCCTAC GATTATGACC CAAACACCGG TATTTTGACA
GTTTATGGAT TAGCTTCGAC AGCTCTAATT CCAATGCTTC AGCAGTACGA TATTGGTACT
GGCTACGATC CCAGTAAATT TGGTACCACA ACTATCAATA GTCCCGGTGT ATTGCCAGGT
GGCGGAGTCA CATATTCGGA TGATCCACCA AACCCTCCAC CTTCTAACTG TCAGCCATGC
AAAATGCTTC CAGACGCTCC AGGAATTGAC CCAACCGAGA CAACTACTAC TACTACTGTT
ACTAACACTG ATGGTAGCGT TTGCACTGAA ATTGACGATA TTCTCATCTC CACGAGTGAC
GATGGCAGTT GGTTTACTTC AACAAGCACT ATTAGCAATA TCTGCCAACA GCCAACTGAA
TACACCACAA CTTTCACTAC CACCAATGAT GATGGTTCAG TTTCTACTGA AACCGGTGAT
GTGTTGATCT CTACTGATTC TGACGGAAGT TGGTACACTA CCACTTCTAT TATCACTGCA
GAAGAACCAA CTGAGTACAC TACCACCTTC ACTACCACCA ATGATGATGG TTCGGTTTCT
ACTGAAACCG GTGATGTGTT GATCTCTACT GATTCTGACG GAAGTTGGTA CACTACCACT
TCTATTATCA CTGCAGAAGA ACCAACTGAG TACACTACCA CCTTCACTAC CACCAATGAT
GATGGTTCAG TTTCTACTGA AACTGGTGAT GTTCTCATTT CTACTGATTC TGACGGAAGT
TGGTACACTA CCACTTCTAT TATCACTGCC GAAGAACCAA CTGAGTACAC TACCACCTTC
ACTACCACCA ATGATGATGG TTCAGTTTCT ACTGAAACCG GTGATGTGTT GATCTCTACT
GATTCTGACG GAAGTTGGTT CACTACCACT TCTATTATCA CTGCAGAAGA ACCAACTGAG
TACACTACCA CCTTCACTAC CACCAATGAT GATGGTTCAG TTTCTACTGA AACCGGTGAT
GTGTTGATCT CTACTGATTC TGACGGAAGT TGGTACACTA CCACTTCTAT TATCACTGCA
GAAGAACCAA CTGAGTACAC TACCACCTTC ACTACCACCA ATGATGATGG TTCAGTTTCT
ACTGAAACCG GTGATGTGTT GATCTCTACT GATTCTGACG GAAGTTGGTA CACTACCACT
TCTATTATCA CTGCCGAAGA ACCAACTGAG TACACTACAA CTTTCACTAC CACCAATGAT
GATGGTTCAG TTTCTACTGA AACTGGTGAT GTTCTCATTT CTACTGATTC TGACGGAAGT
TGGTACACTA CCACTTCTAT TATCACTGCA GAAGAACCAA CTGAGTACAC TACAACTTTC
ACTACCACCA ATGATGATGG TTCAGTTTCT ACTGAAACCG GTGATGTTCT CATTTCTACT
GATTCTGACG GAAGTTGGTA CACTACCACT TCTATTATCA CTGCAGAAGA ACCAACTGAA
TACACCACAA CTTTCACCAC CACCAATGAT GATGGTTCAG TTTCTACTGA AACCGGTGAT
GTGTTGATCT CTACTGATTC TGACGGAAGT TGGTACACTA CCACTTCTAT TATCACTGCC
GAAGAACCAA CTGAGTACAC TACAACTTTC ACTACCACCA ATGATGATGG TTCAGTTTCT
ACTGAAACTG GTGATGTTCT CATTTCTACT GATTCTGACG GAAGTTGGTA CACTACCACT
TCTATTATCA CTGCAGAAGA ACCAACTGAG TACACTACAA CTTTCACTAC CACCAATGAT
GATGGTTCAG TTTCTACTGA AACCGGTGAT GTGTTGATCT CTACTGATTC TGACGGAAGT
TGGTACACTA CCACTTCTAT TATCACTGCC GAAGAACCAA CTGAATACAC TACAACTTTC
ACTACCACCA ATGATGATGG TTCAGTTTCT ACTGAAACCG GTGATGTGTT GATCTCTACT
GATTCTGACG GAAGTTGGTA CACTACCACT TCTATTATCA CTGCAGAAGA ACCAACTGAG
TACACTACCA CCTTCACTAC CACCAATGAT GATGGTTCGG TTTCTACTGA AACCGGTGAT
GTGTTGATCT CTACTGATTC TGACGGAAGT TGGTACACTA CCACTTCTAT TATCACTGCA
GAAGAACCAA CTGAGTACAC TACCACCTTC ACTACCACCA ATGATGATGG TTCAGTTTCT
ACTGAAACTG GTGATGTTCT CATTTCTACT GATTCTGACG GAAGTTGGTA CACTACCACT
TCTATTATCA CTGCCGAAGA ACCAACTGAG TACACTACCA CCTTCACTAC CACCAATGAT
GATGGTTCAG TTTCTACTGA AACCGGTGAT GTGTTGATCT CTACTGATTC TGACGGAAGT
TGGTACACTA CCACTTCTAT TATCACTGCC GAAGAACCAA CTGAGTACAC CACAACTTTC
ACCACCACCA ATGATGATGG TTCAGTTTCT ACTGAAACTG GTGATGTGTT GATCTCTACT
GATTCTGACG GAAGTTGGTA CACTACCACT TCTATTATCA CTGCCGAAGA ACCAACTGAA
TACACTACAA CTTTCACTAC CACCAATGAT GATGGTTCAG TTTCTACTGA AACCGGTGAT
GTGTTGATCT CTACTGATTC TGACGGAAGT TGGTACACTA CCACTTCTAT TATCACTGCA
GAAGAACCAA CTGAGTACAC CACAACTTTC ACTACCACCA ATGATGATGG TTCAGTTTCT
ACTGAAACTG GTGATGTTCT CATTTCTACT GATTCAGACG GAAGTTGGTA CACTACTACT
TCTTTGATTG GAGAAGAACC AACTGAGTAC ACAACCACCT TCACCACCAC CAATGATGAT
GGTTCTGTCT CTACTGGAAC TGGTGATGTT CTCATTTCTA CTGATTCAGA CGGAAGTTGG
TACACTACTA CTTCTTTGAT TGGAGAAGAA CCAACTGAGT ACACTACCAC CTTCACTACC
ACCAATGATG ATGGTTCTGT CTCTACTGGA ACTGGTGATG TTCTCATTTC TACTGATTCA
GACGGAAGTT GGTACACTAC TACTTCTTTG ATTGGAGAAG AACCAACTGA GTACACTACC
ACCTTCACCA CCACCAATGA TGATGGTTCT GTCTCTACTG GAACTGGTGA TGTTCTCATT
TCTACTGATT CAGACGGAAG TTGGTACACT ACTACTTCTT TGATTGGAGA AGAACCAACT
GAGTACACTA CCACCTTCAC TACCACCAAT GATGATGGTT CTGTCTCTAC TGGAACTGGT
GATGTTCTCA TTTCTACTGA TTCAGACGGA AGTTGGTACA CTACTACTTC TTTGATTGGA
GAAGAACCAA CTGAGTACAC TACCACCTTC ACTACCACCA ATGATGATGG TTCTGTCTCT
ACTGGAACTG GTGATGTTCT CATTTCTACT GATTCAGACG GAAGTTGGTA CACTACTACT
TCTTTGATTG GAGAAGAACC AACTGAGTAC ACTACCACCT TCACTACCAC CAATGATGAT
GGTTCTGTCT CTACTGGAAC TGGTGATGTT CTCATTTCTA CTGATTCAGA CGGAAGTTGG
TACACTACTA CTTCTTTGAT TGGAGAAGAA CCAACTGAGT ACACAACCAC CTTCACCACC
ACCAATGATG ATGGTTCTGT CTCTACTGGA ACTGGTGATG TTCTCATTTC TACTGATTCA
GACGGAAGTT GGTACACTAC TACTTCTTTG ATTGGAGAAG AACCAACTGA GTACACTACC
ACCTTCACTA CCACCAATGA TGATGGTTCT GTCTCTACTG GAACTGGTGA TGTTCTCATT
TCTACTGATT CAGACGGAAG TTGGTACACT ACTACTTCTT TGATTGGAGA AGAACCAACT
GAGTACACTA CCACCTTCAC TACCACCAAT GATGATGGTT CTGTCTCTAC TGGAACTGGT
GATGTTCTCA TTTCTACTGA TTCAGACGGA AGTTGGTACA CTACTACTTC TTTGATTGGA
GAAGAACCAA CTGAGTACAC TACCACCTTC ACCACCACCA ATGATGATGG TTCTGTCTCT
ACTGGAACTG GTGATGTTCT CATTTCTACT GATTCAGACG GCAGCTGGTA CACTACTACT
TCATTAATTT CGAACCCTGT CATTTGTGTA AGAGATGGAG AAGGGTGTTC AACACCAACT
GAGTACACCA CTACTTTCAC AACCACCAAT GATGATGGCT CTGTTTCGAC TGGAACCGGT
GATGTGTTGA TCACGACTGA TTCAAACGGC AGCTGGTACA CTACCACTTC TTTGATTGGA
GAAGAACCAA CTGAGTACAC TACCACCTTC ACCACCACCA ATGATGATGG TTCTGTCTCT
ACTGGAACTG GTGATGTTCT CATTTCTACT GATTCAAACG GCAGCTGGTA CACTACTACT
TCTTTGATTG GAGAAGAACC AACTGAGTAC ACCACTACCT TCACAACCAC TAACGCCGAT
GGCTCTGTTT CGACTGGAAC CGGTGATGTG TTGATCACGA CTGATTCAAA CGGCAGCTGG
TACACTACCA CTTCTTTGAT TGGAGAAGAA CCAACTGAGT ACACCACTAC CTTCACAACC
ACTAACGCCG ATGGCTCTGT TTCGACTGGA ACCGGTGATG TGTTGATCAC GACTGATTCA
AACGGCAGCT GGTACACTAC CACTTCTTTG ATTGGAGAAG AACCAACTGA GTACACCACT
ACCTTCACAA CCACTAACGC CGATGGCTCT GTTTCGACTG GAACCGGTGA TGTGTTGATC
ACGACTGATT CAGACGGAAG TTGGTACACT ACTACTTCTT TGATTGGAGA AGAACCAACT
GAGTACACAA CCACCTTCAC CACCACCAAT GATGATGGTT CTGTCTCTAC TGGAACTGGT
GATGTTCTCA TTTCTACTGA TTCAAACGGC AGCTGGTACA CTACTACTTC TTTGATTGGA
GAAGAACCAA CTGAGTACAC CACTACCTTC ACAACCACTA ACGCCGATGG CTCTGTTTCG
ACTGGAACCG GTGATGTGTT GATCACGACT GATTCAAACG GCAGCTGGTA CACTACTACT
TCTTTGATTG GAGAAGAACC AACTGAGTAC ACCACTACCT TCACAACCAC TAACGCCGAT
GGCTCTGTTT CGACGGGAAC AGGTGATGTT CTTATTAGTA CGGATGATGC TGGCAATTGG
TACACCTCCA CATTTAATAT TGGTGAAGTT TCTGCATCTT CAACAGGAAA AGTCATCTGT
TTGAGAGATG GTTCTAACTG TGTCACTGTA TCAAGTACTA GTACGACTGT TCGCACCGTA
TGTCCTGTCT GTTCCGCTCA TACAACTAAG ATCGTTAGTA CTAATTCAGA TGGTTCAGTG
GCAACTGTTT CTGGGGAAGT CATTGTCACT ACGGACTCTG AGGGACACGT CTACACTACT
TCAATTTTGA ATACTGTAGC TCCTTTGGTT ACGAGTGTGG TTACCACAAC AGGACTCCAT
GGGGTACCAA CGACTTACAC TACTGTTGTT CCAGACAATT CTGCTTCTGG TTCCGGTTCT
TCTGGTTCTG GTTCTTCTGG TTCTGGTTCT TCTGGTTCCG GTTCTTCTGG TTCTGGTTCT
TCTGGTTCCG GTTCTTCTGA TTCCGGTTCT GGTTCTGGTT CTGGTTCCGG TTCTTCTGGT
TCTGGTTCCG GTTCTTCTGG TTCTGGTTCT TCTGGTTCTG GTTCTGGTTC TGGTTCCGGT
TCCGGTTCTT CTGGTTCTGG TTCTTCTGGT TCCGGTTCTT CTGATTCCGG TTCTTCTGGT
TCTGGTTCTG GTTCTGGTTC CGGTTCCGGT TCTTCTGGTT CTGGTTCTTC TGGTTCTGGT
TCTTCTGGTT CTGGTTCTTC TGGTTCTGGT TCTGGTTCTG GTTCCGGTTC TTCTGGTTCT
GGTTCTTCTT CCGCATCTGA CACTGGTTCG AACACTGGTA CTGGTACTGG CCCCTCTCCA
GCGTCTGGAT CCGGAAGTTC GGATACCCCT ATACCGTCAG CAGCTCCTGT TGAAGGTGGA
GCTGCATCGA TTGTCTCCAA CAAGTCCCTT GTTATTGCGA TCATTTCGAT ATTTACCATC
TTTGCAATTT GAAAAGATGA CTTATTTATA AGAGAATTAT TACAACCTTT TTTGAAGTTC
ATCATTATCA TCAATATTAC CCCATGCATT AAACCAGGTG AACTGGTTGA AAGGAAATTT
CACTTGAAAT TCACTCGTTG CAAAACACCG AATTATAATT CTATTTCTCA ATTCGACATA
ATACTTTCAT AGATATTCTT ATCGCTGTGC GACTACTTTC TTTTAATTAA CGTGATGATC
ACTGT
|
|---|
| Protein sequence | MLFRKFITVA VLSLSSLVTA QEITENTVDR GTINLGVGDL DIDPGVYYSI VDVALVALVG
GLDVGAGSGF YVTGTSPLLG STVTLTAPLG TLVNNGIVAF NSIRSSLTGT GYSLGGASFT
NNGEMYFGGN GLISALPNVS LTAPDFTNSA GALLVFYQST RGSGTVVLGA VTPITNDGQI
CFYNEVYQQT TSIQGGGCMT ANQDSSIYLT SLLNTVDQDQ TFYLADSEST LQTSPITLSA
DTPIVVGGFG GGNALGLDTA LRPNLLGGPY DYDPNTGILT VYGLASTALI PMLQQYDIGT
GYDPSKFGTT TINSPGVLPG GGVTYSDDPP NPPPSNCQPC KMLPDAPGID PTETTTTTTV
TNTDGSVCTE IDDILISTSD DGSWFTSTST ISNICQQPTE YTTTFTTTND DGSVSTETGD
VLISTDSDGS WYTTTSIITA EEPTEYTTTF TTTNDDGSVS TETGDVLIST DSDGSWYTTT
SIITAEEPTE YTTTFTTTND DGSVSTETGD VLISTDSDGS WYTTTSIITA EEPTEYTTTF
TTTNDDGSVS TETGDVLIST DSDGSWFTTT SIITAEEPTE YTTTFTTTND DGSVSTETGD
VLISTDSDGS WYTTTSIITA EEPTEYTTTF TTTNDDGSVS TETGDVLIST DSDGSWYTTT
SIITAEEPTE YTTTFTTTND DGSVSTETGD VLISTDSDGS WYTTTSIITA EEPTEYTTTF
TTTNDDGSVS TETGDVLIST DSDGSWYTTT SIITAEEPTE YTTTFTTTND DGSVSTETGD
VLISTDSDGS WYTTTSIITA EEPTEYTTTF TTTNDDGSVS TETGDVLIST DSDGSWYTTT
SIITAEEPTE YTTTFTTTND DGSVSTETGD VLISTDSDGS WYTTTSIITA EEPTEYTTTF
TTTNDDGSVS TETGDVLIST DSDGSWYTTT SIITAEEPTE YTTTFTTTND DGSVSTETGD
VLISTDSDGS WYTTTSIITA EEPTEYTTTF TTTNDDGSVS TETGDVLIST DSDGSWYTTT
SIITAEEPTE YTTTFTTTND DGSVSTETGD VLISTDSDGS WYTTTSIITA EEPTEYTTTF
TTTNDDGSVS TETGDVLIST DSDGSWYTTT SIITAEEPTE YTTTFTTTND DGSVSTETGD
VLISTDSDGS WYTTTSIITA EEPTEYTTTF TTTNDDGSVS TETGDVLIST DSDGSWYTTT
SLIGEEPTEY TTTFTTTNDD GSVSTGTGDV LISTDSDGSW YTTTSLIGEE PTEYTTTFTT
TNDDGSVSTG TGDVLISTDS DGSWYTTTSL IGEEPTEYTT TFTTTNDDGS VSTGTGDVLI
STDSDGSWYT TTSLIGEEPT EYTTTFTTTN DDGSVSTGTG DVLISTDSDG SWYTTTSLIG
EEPTEYTTTF TTTNDDGSVS TGTGDVLIST DSDGSWYTTT SLIGEEPTEY TTTFTTTNDD
GSVSTGTGDV LISTDSDGSW YTTTSLIGEE PTEYTTTFTT TNDDGSVSTG TGDVLISTDS
DGSWYTTTSL IGEEPTEYTT TFTTTNDDGS VSTGTGDVLI STDSDGSWYT TTSLIGEEPT
EYTTTFTTTN DDGSVSTGTG DVLISTDSDG SWYTTTSLIG EEPTEYTTTF TTTNDDGSVS
TGTGDVLIST DSDGSWYTTT SLISNPVICV RDGEGCSTPT EYTTTFTTTN DDGSVSTGTG
DVLITTDSNG SWYTTTSLIG EEPTEYTTTF TTTNDDGSVS TGTGDVLIST DSNGSWYTTT
SLIGEEPTEY TTTFTTTNAD GSVSTGTGDV LITTDSNGSW YTTTSLIGEE PTEYTTTFTT
TNADGSVSTG TGDVLITTDS NGSWYTTTSL IGEEPTEYTT TFTTTNADGS VSTGTGDVLI
TTDSDGSWYT TTSLIGEEPT EYTTTFTTTN DDGSVSTGTG DVLISTDSNG SWYTTTSLIG
EEPTEYTTTF TTTNADGSVS TGTGDVLITT DSNGSWYTTT SLIGEEPTEY TTTFTTTNAD
GSVSTGTGDV LISTDDAGNW YTSTFNIGEV SASSTGKVIC LRDGSNCVTV SSTSTTVRTV
CPVCSAHTTK IVSTNSDGSV ATVSGEVIVT TDSEGHVYTT SILNTVAPLV TSVVTTTGLH
GVPTTYTTVV PDNSASGSGS SGSGSSGSGS SGSGSSGSGS SGSGSSDSGS GSGSGSGSSG
SGSGSSGSGS SGSGSGSGSG SGSSGSGSSG SGSSDSGSSG SGSGSGSGSG SSGSGSSGSG
SSGSGSSGSG SGSGSGSSGS GSSSASDTGS NTGTGTGPSP ASGSGSSDTP IPSAAPVEGG
AASIVSNKSL VIAIISIFTI FAI
|
|---|
| |