Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_67626 |
Symbol | BED1.1 |
ID | 4838436 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009044 |
Strand | + |
Start bp | 1218769 |
End bp | 1221220 |
Gene Length | 2452 bp |
Protein Length | 543 aa |
Translation table | 12 |
GC content | 43% |
IMG OID | 640389751 |
Product | zinc finger protein |
Protein accession | XP_001384188 |
Protein GI | 150865107 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3064] Membrane protein involved in colicin uptake |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.482303 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ACAAGCTTAC AATTCAATTC TAATTCTTGT GTTTTTCCAA AGATTTTTGT TCATTATTAC ACTTATGCAT AGTTCCAACC CTAATTAAAG AATCCATAGA TTGATCTTCA CTTCAGAACT ACTATTCATT CTTTTTCGAC TTTTTTTCCC TTATACAGCA ATTTTATCTT TATTTTTCAC TAGATTACAT CAATTGACAT CTAACATCGT TGCAAACGGA AACACCCTTG TCCTCGAGCA CCTTCTTCCA CAGCCCATCT GATAGAACCA ACGGCATTTT CGGCATTTGC TCGATATCTA CACCATTATT TCAAGCAAGC GATCACACCC AAGTCTTGGA ATTGTGATCC AACCTGTCTT TCCCTTATTG TCTGAGGCAA TTGTCCCTAC CCTTCTGTGA AATAATTATA CACGTCTTCC ACAGACACTG TCGTGGTAGT ATTAAGTGGA ACTGTTCAAT TTTAGCCTCC ACACGGTGTC TATTATCGCC TTGGAAAATT GACTTCACTA TGTACTTGTA GTAGAAGGAT GTCCTCCGTA CCTGAACAAA ATCCTGGCAG CGATAACAAC ACACTATCCA ATTCCACAAC CAAGGTCACG GCTAATCAAT ATCTTGATTC AAATGTCTTT GCTGCTCCAC AACCAACCGC TCTGTCCGAG GCGACAAGCG CCCCGAACGA ACAGACTTCA TCAGCACTTG GCTACTACCC CCAGTCGCTG CAGAACACCC AACAGCCTCC AGTTCACTAC ATTGACCATG GGTTTCAGCA GCGAGCGACT CTTCAAATGG TACCCCAGCA GCAAAATATG AATGTACAAC AATTGCTGCA ACCGCCACAA CAAATACAAC AGCCGCCGGT ACAGTTCCAG CCTCTTGTAG TACAACAGCA TTATTATGCG CCTCCTCCCA CAAACACGTC AGACTCGTTC TACCAACAGT CGCTTCACGA CCTTTCTTCT TACGCATATG CACCCTCGGC AGTTCAGATC ATGGGTTCTA CTCCGGCAGT AGCTCAACCG TACCTTGTTG CGACGCAGCA GTACGACGCT TTCCAGCAAC AGCAGCAAGC GCTGACGCTG CAGCCACAAG CACAAGCACA AGCACAGCTC ACACAATCCT CACAATCCTC ACAATCCCAG CAATTACAAA CGTTGCAACA GCAACAGCAA CAGCAGCAAC AACTACAACA ACAACAACAA CAACAACAAC AACAACAACA ACAACAACAA CAATTGCAAA AAATGGCACA GCCATCTCCA TTGCTTCCTA GTAATCCCAC CTACCAGGCG CCAGCTCAAG GTTCATACCA GCAAAGTAAT TACATGCAAT TGCTTTTGGT ACCGACTCAG AAACGACAGA TCTCTACACC AAATGTATTG GGCAGCTCAG TTTCTTCAAT TTCTGGAGAT CAATCTGCTG TCGGACTGAC TAATGACCAA TTGAATTATA TGAACTCGTC GTTGCCGCCA TTGACTCCCT ACGGAAATAT TTATTCAGGA AATCTCCAAC AGGGTCCTCT GCAGAGGTAC CAGACACTGC AACTGGGCCA ACAGCCCACC GTGTCATTTC CATTAAATGC CCAGCAGCCA GTCTTGGGTC TTGGAAGTGG CCAGATGTCT GGTCAAGCAC CTCCCTACGT AAAAATGGAT TACGATTTCA GCGGTGCTAC AGGATCTTCT TTTTCTGTAA TGCCCAATGT AGACGGATCT ATAACATCTG CTTCATCTTC AGCCAATGAC ATACCAAAAA AAGGTCGGAG AAGAAGCAGC AAGTCTTCCC ACATTATGAC TCCAGAGACA GCCGAGAGAA ATCGATGCAG AATTTGCAAC AAACAGTTCA AGAGACCTTC ATCACTTCAA ACCCATTACT ACTCACATAC GGGAGAAAAG ATCTTCAAAT GTCCCTGGCC CGGTTGTGGG AGATTGTTTT CTGTCAAGTC AAATATGACG AGACACTACA GACTTCACGA AAGAGATTTC AACAAACAGA ACGACAAGGA ACTCAACCCC ACTACCTTGC CCCGGGATCT AGAGTTATAT CCTTCCAAAA TCCTGTCCTC TAGCAATCCT ACTTCAACTA CTACTACTGC TAATAATAAT GCATTGGAGG GCAGCTACAA TTATCAACAG CCTAACATTA AAAAACAAAT ACTGGAATAA TCAAAATTGA AAAATCTACT GCCAACATCT TATAACCCCA GGACTACGAA AGAGCTGGTG TTGAAGAGAT TTTTCTAGCC AATAGAACTA TTTCCCTCAA AAAAGGTATT TACTGTCTGA CAGGAAAATA GAGTAAAGAC AGAAACATAT CGCCTGGGGA ATATACAGAA TAGTCTTTCG ACTACTCGAA CTTAGCCCAT AGCTAGGATG ATAGCGACCG GCATCATTCT GCATGGGTCA AATGTATGTA TCATTAGTGT ATAATAATAC AATAACCTGA ATTATCTCTC CT
|
Protein sequence | MSSVPEQNPG SDNNTLSNST TKVTANQYLD SNVFAAPQPT ASSEATSAPN EQTSSALGYY PQSSQNTQQP PVHYIDHGFQ QRATLQMVPQ QQNMNVQQLS QPPQQIQQPP VQFQPLVVQQ HYYAPPPTNT SDSFYQQSLH DLSSYAYAPS AVQIMGSTPA VAQPYLVATQ QYDAFQQQQQ ASTSQPQAQA QAQLTQSSQS SQSQQLQTLQ QQQQQQQQLQ QQQQQQQQQQ QQQQQLQKMA QPSPLLPSNP TYQAPAQGSY QQSNYMQLLL VPTQKRQIST PNVLGSSVSS ISGDQSAVGS TNDQLNYMNS SLPPLTPYGN IYSGNLQQGP SQRYQTSQSG QQPTVSFPLN AQQPVLGLGS GQMSGQAPPY VKMDYDFSGA TGSSFSVMPN VDGSITSASS SANDIPKKGR RRSSKSSHIM TPETAERNRC RICNKQFKRP SSLQTHYYSH TGEKIFKCPW PGCGRLFSVK SNMTRHYRLH ERDFNKQNDK ELNPTTLPRD LELYPSKISS SSNPTSTTTT ANNNALEGSY NYQQPNIKKQ ISE
|
| |