Gene PICST_67545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_67545 
Symbol 
ID4838742 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009044 
Strand
Start bp677897 
End bp679073 
Gene Length1177 bp 
Protein Length348 aa 
Translation table12 
GC content45% 
IMG OID640390057 
Productpredicted protein 
Protein accessionXP_001384427 
Protein GI150865278 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.301787 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATTTGTAAAT GTCGTCTTCA GGTTTGCAGA GACGTCGTGG TAACAAGACG GCCTCTTCCG 
GCGCAAATTC CGGTTCCGGT GGCCGTACTT CGGATTCCTA CGAAGATAAT AACCATACCA
AGAACAGCAA TGAAGCTGTT TCTGACCACA AAATCGGGTA CGATTCCCGA GACATTGAGA
GTAGAGAATC GTTGAAATTG CCACTTTTGA CGCTTATGGA GGAAGTCTTG TTGATCGGAT
TGAAGGACAA AGAGGGTTAT CTTTCTTTTT GGAATGACAA CATTTCCTAC GCTTTGAGAG
GATGTATTTT GCTTGAATTA GCCTTCCGCT ACAAGATTAC TTTGGTCAAC GATCCCGCAA
GACGTCGTTT CGAGTTGAGC GATCGTCTTA TCGAGGTCAT TGACTCCGAG CCAACTGGCG
AAGTGTTGTT GGATGAAGCT CTCAAGATCA TGAAGAACGA TGGCTCCAAC TTGTCGGTGA
CAAACTGGAT CGATTTGTTA AGTGGAGAGA CATGGAACTT GATGAAAATC AACTACCAGT
TGAAACAAGT TAGAGAGCGT TTGGCTAAAG GATTGGTAGA CAAAGGAATC TTAAGGACTG
AGAGAAAGAA CTTCTTCTTG TTCGACATGG CTACCCATCC TGTTGCCGAC AAGTTGCTGA
AGGAACATAT CAAGAACAGA CTCTTGAACG TATTAGTCAA CAGAAATGTC GATTTGGACA
CCGTAGCTAA TGACCAATTT CCTCAGAACA CGTCGTTCCG TTACTTGAGA ACGATTGCCT
TGGTCTGTGG AGCGTACGCT GCCAATGTGT TGGAGAATGT GTTGTTGTCG TTGAACTACG
ACAAGCGCGA CCAGGCCTTT GCCAGAGCCG ATGAGTTGCT CACAGACTTC CTGGATTTCC
CCTTCAACTT GTCGCATCAG AGTCCTTTGG GTATAGGCTT GAACTTGGGC CAGGAAATTA
CCTCGGAAGT AGAAGCCAGC TCAAGTAGTG AGTTGCAGTT GGAGTTGATC GCTGCCGTCT
TGAGCGTGTT CGCTAGGATG GACTCCATCT TGTGAACCAC GTCATATTCT GTATTGTCAT
CTTCTGACAT TATATATAGT CCACATCATC TACACACTCT TCAATTCAGC ACCTTCTTTC
GTCCTATTTA GATACTTAGT GCAAGACATA TATCTGG
 
Protein sequence
MSSSGLQRRR GNKTASSGAN SGSGGRTSDS YEDNNHTKNS NEAVSDHKIG YDSRDIESRE 
SLKLPLLTLM EEVLLIGLKD KEGYLSFWND NISYALRGCI LLELAFRYKI TLVNDPARRR
FELSDRLIEV IDSEPTGEVL LDEALKIMKN DGSNLSVTNW IDLLSGETWN LMKINYQLKQ
VRERLAKGLV DKGILRTERK NFFLFDMATH PVADKLSKEH IKNRLLNVLV NRNVDLDTVA
NDQFPQNTSF RYLRTIALVC GAYAANVLEN VLLSLNYDKR DQAFARADEL LTDFSDFPFN
LSHQSPLGIG LNLGQEITSE VEASSSSELQ LELIAAVLSV FARMDSIL