| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_66312 |
|---|
| Symbol | EGC2 |
|---|
| ID | 4850979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 618933 |
|---|
| End bp | 621264 |
|---|
| Gene Length | 2332 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | |
|---|
| GC content | 46% |
|---|
| IMG OID | 640392687 |
|---|
| Product | Endo-1,4-beta-glucanase |
|---|
| Protein accession | XP_001387349 |
|---|
| Protein GI | 126273940 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2730] Endoglucanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0233843 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TGAGAGCCTC AGACAATTTT TCCAATATCG TGTCGGGCAT CTCACAAGTC AGCCGATATT
CTAGAGCCGC CTGTAGACTC AAAGTTTTGC GTCAGGGTTC TTTGGCTCGA AACGTCCTAG
ACTTACCAGA CCAGGTAAGC CGGAATGGAT CTGGTTTCAT CGCCATATCA GCGTCAGTGT
CATAGAAGTG GCTTAAATCG AAGGAGGGGT GATCATGTGA CTGATCAATT ACCTCATTGA
GAGGGTATCC CGCACTTATG CCCCATTTCC CGCATGGACC TGAACTCCCA ATTTTGTGTC
TGTCTGGGGA TAGAGTTGCA TTAGGCAGTC AATGCAGTTT GGCTCTGGCG GTGTCGGCAA
TTTCGAGGTC TGGGCCAGTC CCACCAAATT CACATTCTTG TAACTTCCAA AGCTTTTGAG
TCGGCGTAAG GTGGATCCAG ATTTTCAGAC ACCAGCCATA CTGTTACCGC CCAGGAATCA
GCTGTCTGCG ATTGTCGGGA ACCAGCTACC ACTGGTGCAA CAGACATTTA CCCAAACTAA
GAAATCAGGC TGCGAAATCT GGGGCTCTTT GGTTCCAGAT GTCGGTTCCT GGGCTCGGCA
CAGTTTTCTC TACAATACTC GGGAAGTTTG GCCACCATCG TTTTTTAGAT TGTCCCCAGA
TTTGATCCAG GCTATATAAG ACTCTCGGAC TGCTCTCTGA TTCCGATCTA ACGTTCATCT
TGTTCAAAAT AGAAAACAGA CACTTATAGA TTTTACATCT CTTTTGTCAA AGTAATTCTA
ATACCCTATA CAATGTCTAC CGGATTCTTA ACTACCAAGA ACACCAAGAT CGTCGATGCT
AACGGAACCC CAGTCGTTCT TGTCGGTACT GCCATCGGTG GTCACTTGAA CATGGAAAAC
TTCATCACTG GTTACCCAGG TCACGAAACC GAACACAAGA AGGTCTTGAA GAAGAAGATC
GGTGAAGAAA AGTTCAACTT CTTCTTTGAC AAGTTCTACG AATACTTCTG GACTGAAAAG
GATGCCGAAT TCTACAAGAA CGAATTGGGC TTCAACTGTT TGAGAATTCC TTTCAACTAC
CGTCACTTCA TCGATGACGA AGTTGACTTG TTCAAGATCA ACCCTAAGGG TTTCGAAAGA
TTGGACAGAG TCATCGACAT CTGTTCCAAG TACGGTATCT ACACCATCTT GGACTTGCAC
GCTACTCCAG GTGGTCAAAA CCAGGACTGG CACGCTGACT CCGGTATCCA CAAGTCTATC
TTCTGGGACT TCAAGGTCTT CCAAGACTCT ATGGTCAACT TGTGGGTTGA ACTTGCCAAG
CACTACAAGG ACAACACCTG GGTTGCTGGT TACAATCCTT TGAACGAACC TGCTTCGCCA
GACCACCTGA AGTTGGTCAA CTTCTACCAA AGATTGCAAG ATGAAGTCAG ACCAATTGAC
CCTCACCACA TCTTCTTCCT TGACGGTAAC ACTTACTCCA TGGACTTCAG ACAATTCCCA
GCTCCAAAGG ACTTCATTCC TAACTCTGTC TACTCCATCC ACGACTACTC TACCTTCGGT
TTCCCAAACA TCCAAGGTAC CTTGTACGCC GGTACTGCTG CTGAAAAGGA CAAGTTGAAG
AGACAATACG ACCGTAAGGT TGAATACCAT CTTGAACACA ATGTTCCCGT CTGGAACGGT
GAATTCGGTC CAGTCTACGC TTCTAAGGAA AGAGGTGATG AAGACCCAGA CACCATCAAC
AGAGCTCGTT ACCAAGTGTT GAAGGACCAA TTGGCCATCT ACAAGAAGGG TGACCCATCT
GGTGACGGTA CCCCAATCTC CTGGTCCATT TGGTTGTACA AGGACATTGG TTACCAAGGT
TTGACTTACG TTGACCCTGA ATCCAAGTGG TACAAGGTCT TCGGTGAATT CTTGTTGAAG
AAGAAGAAGT TGGGTCTCGA CAGATGGGGT AACGACATCG ACCCAGCCTA CAACAAGTTG
TACCAGGACT TGATCGACCA CATCCACAGC AACGTCCCAG AAAAGTACCA CAAGGCTCTT
TACCCTCACG GCTGGACCAC TCAAGACTAC TTGTTCAGAG TTGCTAAGGA CATGTTGTTC
TCTCAATACG CTCAACACGA ATACGCTGAC TTGTTCGTCG GTCTTTCGTT TGAAGAATTG
GACGAACTTG CTGCTTCCTT CAAGTTTGAA AACATCAAGC AAAGAAAGGA ATTGAACGAA
ATCTTGAAGG ACTACTAGAG ATGCAATCTC GTTCAATAGA GAGATGCTAG GTGATGAGGC
GAAAAATTTG ACTATCTGAC TTTATAGAGT AAAATACACA TAATTTGTGT CT
|
|---|
| Protein sequence | MSTGFLTTKN TKIVDANGTP VVLVGTAIGG HLNMENFITG YPGHETEHKK VLKKKIGEEK
FNFFFDKFYE YFWTEKDAEF YKNELGFNCL RIPFNYRHFI DDEVDLFKIN PKGFERLDRV
IDICSKYGIY TILDLHATPG GQNQDWHADS GIHKSIFWDF KVFQDSMVNL WVELAKHYKD
NTWVAGYNPL NEPASPDHLK LVNFYQRLQD EVRPIDPHHI FFLDGNTYSM DFRQFPAPKD
FIPNSVYSIH DYSTFGFPNI QGTLYAGTAA EKDKLKRQYD RKVEYHLEHN VPVWNGEFGP
VYASKERGDE DPDTINRARY QVLKDQLAIY KKGDPSGDGT PISWSIWLYK DIGYQGLTYV
DPESKWYKVF GEFLLKKKKL GLDRWGNDID PAYNKLYQDL IDHIHSNVPE KYHKALYPHG
WTTQDYLFRV AKDMLFSQYA QHEYADLFVG LSFEELDELA ASFKFENIKQ RKELNEILKD
Y
|
|---|
| |