Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_61460 |
Symbol | |
ID | 4840074 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | - |
Start bp | 340508 |
End bp | 342019 |
Gene Length | 1512 bp |
Protein Length | 496 aa |
Translation table | 12 |
GC content | 38% |
IMG OID | 640391389 |
Product | predicted protein |
Protein accession | XP_001385753 |
Protein GI | 150866230 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG5574] RING-finger-containing E3 ubiquitin ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0156696 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTCG CCAAAGTTCT CGAACAGACC TTGATAGAGG ATGACATACC CGAAGAATGG ATGGAGGCAG CCATTCAATA CAAAGCTCTA AAAAAGTGCA TCAACAAGGT AGTCAACGAA CTCAAGTTCT TGGGCCTTGA AAAAAATACC CTCAAGTTGC TCTTCCAAGA TGCTGACAGT AAAATCGTTG AACTCGACGA AAATGATACA ACTGCCTCAA ACCCAATAGT CGCTGAATAT ACCTTGACCA AGTCCAAAGA CAACAGTCAC GACATTAAGC CGATGCTAAA GATCACCTTG GACTATTCAA ACGACCAATA CACAGATGAT CATATCTATG AGTTGGGCCA GCAATTGAAG AAACGAATAG AATCTTTGCT TAATGACGAT GCACCTCTCC AGCACTTGAA ACCACCTCCA CTAGAATCAT TTAAAGCTGA TACACCAGAA GTGGATTCAT CAGAAGATCT GGATACCGAA AAAATCATTG AATTGAAAGA AGAAAATGAT GAGATCATTG TGATATCACC AGCGCACAGT CGTGAAGGTT CACCACCAGC AGTTGCAAAA TCAATCAGTG AAAAATCAGA AGCAACAAAT ATAGATTCTG CATTGTCTGA GTCTACACCA CCAGCAACAC ATAACAGGAA GAAAAATGAA ATTTACATCA TGTTAAACTC AGACTCAAAA TTCTTCCAAA TGCTAGAAGG TGAACTTGAA AACCTCGATA AATTAAAAAC GGCAGAGGAA AAGAAACTTA TCGATGAGGT TCAAGAATTA GGAGGAATAG TAGCTACATT GTCAAATAAT GCTTCTAGAT GGAAGAATTC TGATATGTAC ACATGGAGAG AACTTTTTAG AATTTATTTG GATTCCGAGG TGTTTTTCAA GTATAATGAG ACCTCCTTGC TTTCATCACA AAGGAACAGC GAACAAATCA AGAAGAATCT TGCACAATTT CTAGATAACG TTGAGAAATC AGGAATTCTA CAGAAATTCA AAAACCTGAA GAGCTTGGAT GCTTTCAATC AATTTGTGAG CATGAATTAT CATCTTTTGA AAATCTTGCA ATTTCAATCC ATAAATACAG AAGCATTCAG AAAGATCTTG AAAAAATTCG ACAAACAAAC TTCACTTGGT ATTCTGCACA AGTTTCCGGA ATTAGTTTCC AATGACCACA TTTTTATTAC AGGAACCTCT ATAGCTCAAT CCATTTGTTA CATTCTCCAA AATAGAGTCC TCACTTTGAT TCCACAACTA GAGGACTACA CTTGCCCAAT TTGTATGTCA ATCGCTTACA AGCCGATCAG GTTGCAATGT GGACACTTGT TTTGTGTGAG GTGTTTGGTC AAGTTGAAGC AACAAAATAA GATTAACTGT CCAATTTGCA GAAACGAGAA CGCAATACTT ATTGCAGACG GGTCTAATTT GGATATGGAT GCAATGAATG TAATGGAAAA ATATTTCCCC GTTGAAGTCA AGGAGAAATT AAGAGATAGG AAGAAAGAGC AG
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Protein sequence | MKFAKVLEQT LIEDDIPEEW MEAAIQYKAL KKCINKVVNE LKFLGLEKNT LNKIVELDEN DTTASNPIVA EYTLTKSKDN SHDIKPMLKI TLDYSNDQYT DDHIYELGQQ LKKRIESLLN DDAPLQHLKP PPLESFKADT PEVDSSEDSD TEKIIELKEE NDEIIVISPA HSREGSPPAV AKSISEKSEA TNIDSALSES TPPATHNRKK NEIYIMLNSD SKFFQMLEGE LENLDKLKTA EEKKLIDEVQ ELGGIVATLS NNASRWKNSD MYTWRELFRI YLDSEVFFKY NETSLLSSQR NSEQIKKNLA QFLDNVEKSG ILQKFKNSKS LDAFNQFVSM NYHLLKILQF QSINTEAFRK ILKKFDKQTS LGISHKFPEL VSNDHIFITG TSIAQSICYI LQNRVLTLIP QLEDYTCPIC MSIAYKPIRL QCGHLFCVRC LVKLKQQNKI NCPICRNENA ILIADGSNLD MDAMNVMEKY FPVEVKEKLR DRKKEQ
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