Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_60393 |
Symbol | SPF1 |
ID | 4839534 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009045 |
Strand | - |
Start bp | 1099474 |
End bp | 1103115 |
Gene Length | 3642 bp |
Protein Length | 1209 aa |
Translation table | 12 |
GC content | 44% |
IMG OID | 640390849 |
Product | P-type ATPase |
Protein accession | XP_001385220 |
Protein GI | 150865839 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0474] Cation transport ATPase |
TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC [TIGR01657] P-type ATPase of unknown pump specificity (type V) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0027505 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAGCA TTGTTGACAA CTCCGCTATA GCTGGGGCTG AGTTGTTGGT TCCCAAGCTG TTTTTATTCC GTCCCTATGT GTGGCCATTC ACCATAGTGT ATCCAGTTTT CCTTGAGATC TACTTTAACC ACTACGACAA GTATGTTGTA GGGGCCGAAT GGACGTTTGT GTATTTGATC ACGATCATTT CTGTTAACAT GCTCTTCTGG TTGATGCCCC ATTGGAACAT CAACATTGAC TCTCGTTTCA ACTACTCTCC TGTGAAGACG ATTGCTGAAG CCAGTCATAT CAAAATCACC CCTGCCCCAA ACCTGGGAGT TGGCGAAATC TGTTCAATTT CTAGAGAAAC ATTCCATGAT GGTGAAAAGC AGGTGTCGTT TTTGTACCAG AAACGTCGCC ACTTGTTCCA TACCGAAACC CAGAAGTTTT CGCCTCCTGC TTTCCTCTTC GACGAAGAGC CTGAATTGGC CAAGTTCCAG AACTCCACAG GGTTACTGGG AGACTTGGAG AAGCTTTTGA GAAACTACGG TGAAAACAAG TTCGATATTC CTGTCCCTAC GTTCTTGGAG TTGTTCAAGG AACATGCCGT TGCTCCTTTC TTTGTGTTCC AGATATTCTG TGTAGCTCTT TGGTGTATGG ATGAGCAGTG GTACTACTCG TTATTCTCGC TCTTTATGCT TGTTTCGTTC GAGATGACTA CCGTCTTCCA GAGAAGAACG ACCATGGCTG AGTTCCAGAG TATGGGTATC AAGCCTTACA CTATCTACAC TTACAGAAGT GAAAAGTGGA AACAATTGAA GACCACCGAA TTGCTTCCTG GCGATTTGGT TTCTGTCACC AGAACTAGCG ATGACTCTGC ACTTCCCTGT GATTTACTCT TGACTGACGG TAGTGCAATT GTTAACGAAG CCATGTTGTC TGGTGAGTCT ACACCTTTGT TGAAGGAGTC GATTAAGTTG AGACCTAGCG GTGAAAAGTT GCAGCCAGAT GGCTTTGACA AGAACTCGAT TTTGCATGGT GGTACATCGG CTTTGCAAGT GACCAAGCCG GAAAACCCCA TCGTTCCTAT TGCTCCCGAT AACGGAGCTC TTGCGTATGT GACCAAGACA GGATTTGAAA CTTCGCAAGG TTCTTTGGTT CGTATGATGA TCTTCTCCAG TGAAAGAGTT TCTGTGGGCA ACAAAGAGGC ATTACTCTTC ATCTTGTTCT TGTTGCAATT CGCTATAGCT GCCTCGTGGT ACGTTTGGGT CGAAGGAACG AGGATGGGTA GAACCCAAGC CAAGTTAATC TTAGACTGTA TCATTATTAT TACGTCCGTA GTTCCTCCTG AGTTGCCTAT GGAATTGACT ATGGCTGTGA ACTCGTCTTT GGCTGCTTTA CAAAAGTACT ATGTTTACTG TACTGAACCT TTCAGAATTC CTTTGGCCGG TAGAATCGAT GTCTGTTGTT TCGACAAGAC CGGAACCTTG ACTGCAGAAG ATCTTGTGTT TGAAGGTTTA GCTGGTTTCA ACCTCAACGA CATCCACCAC TTGTTCAAGT GCGAAGACGC CCCTGAAACG ACTTCTCTTG TCTTGGGTTC GGCTCATGCT TTAGTTAGAC TTGATGATGG TGACATTGTA GGTGATCCAA TGGAACAAGC CACCTTGAAG GCCGCCCATT GGAACGTCGG AAATAACGAT ACTGTAGAAA GAGACATTGG AAAAGGCAAG TCGGAAAAGA TCAAGATCTT GCGTCGTTTC CAATTCTCAT CCGCCTTGAA AAGATCCTCG GCTATCTCCT CCATTAATAC CGTCCCTGGT AAGAACTTTG TAGCCGCTAA GGGTGCTCCA GAGACAATCC GCAATATGAT TATTGATGCT CCAGAGAACT ATGAAGATAT CTACAAGTCG TTCACCAGAT CTGGTTCTCG TGTGCTAGCT TTGGCTTATA AGTACCTTGA TGCTAACGTC AATGTGAATA AGGTTGCCAG AGAAGAAATC GAGTCCAAGT TGCACTTTGC TGGGTTTATT GTTTTCCACT GTCCTTTGAA AGACGATGCT GTGGAAACAA TCAAGATGTT AAACGAATCC TCTCACCGTT CTGTTATGAT CACTGGTGAC AATCCTTTGA CTGCTTGTCA CGTTGCTAAG CAGGTGGCTA TCACCACTAA GGACGTGTTG ATCTTGGATG CTCCGGAGGA GCACCATGAT GTTACTGATG AGCAGAATTT GGTCTGGAGA AACGTCACTG AATCTATTGT TATTCCTTTC AAGTCTTCCG ATGAAATCAA CACCGAGTTG TTCAAGAAGT ACGATGTCTG TATCACTGGT TATGCGTTGG GCTACTTGGC TGACCACGAG CAAATTTTGG ACTTGTTGAA GCACACTTGG GTTTATGCTA GAGTTTCACC AAACCAGAAG GAGTTCATCT TGACATCGTT GAAGGAAGCT GGCTACAACA CCTTGATGTG TGGTGACGGA ACCAATGATG TGGGTGCTTT AAAACAAGCC CACATTGGTG TCGCTTTGTT GAACGGTACT GAAGACGGCT TGAAGAAGAT TGCTGAAAAC AGAAAGATCG AAGCCATGAC TAGAGTCTAT GAAAAGCAAG TGGAGATTTT CACCAACTGG GGTAAGAACC CACCTCCAGT TCCACCTCAA CTTGCCCATG TCTATCCACC TGGACCAAAC AATCCAAAAT ATTTGGAAGC CTTGCAAAAG AGAGGTGTGG AAATTACAGA TGAAATGAGA CGTGCTGTGG CCATTGCTAA CAGGGGTGGT CTTCCCAAGA TCAAAGCTAA GGAAGGAAAG CAAAGTGCCT CTAGTATTGC TGACTCTTTG ATGGCTTCAC TTAATGATCC AGAAGGTGAA GACGAAGCTC CAGTCTTGAA GTTGGGAGAT GCTTCTGTTG CTGCGCCTTT CACTTCCAAG TTGGCTAATG TGTCTACTGT TACAAACATT ATTCGTCAAG GTCGTTGTGC CTTGGTTTCC ACCATTCAAA TGTACAAGAT CTTAGCCTTG AACTGTTTGA TTTCTGCCTA CTCTCTTTCC GTGTTGTACT TGGCTGGAAT CAAGTTTGGT GATGCTCAAT CCACCATCTC TGGTATTTTA TTGTCTATTT GCTTCTTGTC GATTTCCCGT GGTAGGCCAA TTGAGAAGTT GTCAAAAGAA AGACCACAGG ACGGTATCTT TAACAAGTAC ATCATGGGTT CTATCTTGGG TCAATTCGCA ATTCACATTG TCACGTTGAT CTACATTACC AGAGAAATCT ATATTAATGA ACCAAGAGAA CCCCAGATTG ACTTGGAAAA GGAATTCTCT CCATCATTGT TGAACACCGG TATGTTCTTG TTGCAGTTGG CTCAACAGGT GTCCACCTTT GCTGTCAACT ACATTGGCTT GCCATTCAGG GAAAGCATTA AAGACAACAA GGGTATGTAC TATGGTTTGT TGGGTGTTTC ATTCTTGACT CTTGCTGGAT CCACTGAATT AATGCCAGAG TTGAACGAAG CCATGAAGTT TGTCAAGATG AGCACAGACT TCAAAATCAA GTTGACAGGG TCAATTTTGA TTGATTTGTC CTTCACCTGG GCCATAGAAG TGGTATTGAA GCACTACTTC ATGAATTCCG GTCCGGCTGA CATTGCTATT AGAGATGATT AG
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Protein sequence | MSSIVDNSAI AGAELLVPKS FLFRPYVWPF TIVYPVFLEI YFNHYDKYVV GAEWTFVYLI TIISVNMLFW LMPHWNINID SRFNYSPVKT IAEASHIKIT PAPNSGVGEI CSISRETFHD GEKQVSFLYQ KRRHLFHTET QKFSPPAFLF DEEPELAKFQ NSTGLSGDLE KLLRNYGENK FDIPVPTFLE LFKEHAVAPF FVFQIFCVAL WCMDEQWYYS LFSLFMLVSF EMTTVFQRRT TMAEFQSMGI KPYTIYTYRS EKWKQLKTTE LLPGDLVSVT RTSDDSALPC DLLLTDGSAI VNEAMLSGES TPLLKESIKL RPSGEKLQPD GFDKNSILHG GTSALQVTKP ENPIVPIAPD NGALAYVTKT GFETSQGSLV RMMIFSSERV SVGNKEALLF ILFLLQFAIA ASWYVWVEGT RMGRTQAKLI LDCIIIITSV VPPELPMELT MAVNSSLAAL QKYYVYCTEP FRIPLAGRID VCCFDKTGTL TAEDLVFEGL AGFNLNDIHH LFKCEDAPET TSLVLGSAHA LVRLDDGDIV GDPMEQATLK AAHWNVGNND TVERDIGKGK SEKIKILRRF QFSSALKRSS AISSINTVPG KNFVAAKGAP ETIRNMIIDA PENYEDIYKS FTRSGSRVLA LAYKYLDANV NVNKVAREEI ESKLHFAGFI VFHCPLKDDA VETIKMLNES SHRSVMITGD NPLTACHVAK QVAITTKDVL ILDAPEEHHD QNLVWRNVTE SIVIPFKSSD EINTELFKKY DVCITGYALG YLADHEQILD LLKHTWVYAR VSPNQKEFIL TSLKEAGYNT LMCGDGTNDV GALKQAHIGV ALLNGTEDGL KKIAENRKIE AMTRVYEKQV EIFTNWGKNP PPVPPQLAHV YPPGPNNPKY LEALQKRGVE ITDEMRRAVA IANRGGLPKI KAKEGKQSAS SIADSLMASL NDPEGEDEAP VLKLGDASVA APFTSKLANV STVTNIIRQG RCALVSTIQM YKILALNCLI SAYSLSVLYL AGIKFGDAQS TISGILLSIC FLSISRGRPI EKLSKERPQD GIFNKYIMGS ILGQFAIHIV TLIYITREIY INEPREPQID LEKEFSPSLL NTGMFLLQLA QQVSTFAVNY IGLPFRESIK DNKGMYYGLL GVSFLTLAGS TELMPELNEA MKFVKMSTDF KIKLTGSILI DLSFTWAIEV VLKHYFMNSG PADIAIRDD
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