Gene PICST_59900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_59900 
Symbol 
ID4839211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009045 
Strand
Start bp430481 
End bp431302 
Gene Length822 bp 
Protein Length274 aa 
Translation table12 
GC content37% 
IMG OID640390526 
Productpredicted protein 
Protein accessionXP_001384745 
Protein GI150865503 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0738] Fucose permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.787504 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTAGTTAGTG GATTCTTTTT TCAGGGCATA GGTATTGGAA TCTGTTTCTC TCAGTTCAAT 
GTTTTCATGA GTCGTTTACA AAACAGCCCC CTTGCTATCG GTCTCTTCCA TGGGAGCTGG
GGGTTGGGTG CCTCGACGTC TCCTCTTATT GCTACTGGTT TAGTGGAAGC TGGAATTAAA
TGGAATATGT TCTATCTTAT ACTTCTTGGG TTTCTGATCT TCAATATTGC CAACTGTTAT
TTGGCTTTCG TTCACTGGGA AAGTTCTTTG ACACCCTGGG ATCCCAAAGT TAAGAAGACC
GATGAAATAG AAGAAAACCT TTCAAAATTA GACGGGTTGA TGGCGGAAGC TGTAAGAACC
AAAATGACCT GTTGGGCATC TTTGTTTGTG TTTTGTTATC AAGGTGCTGA AGTTTCGTTT
GGAGGCTGGT TAACTACCTA TCTACGTGAT TATAGAATGT TTACATCCAC TTCCATTTCA
TACGTTGCTA CATGTTATTG GTTTGGAATC ACATTAAGTA GATTGGTAGT TACTACTTTT
ATTCACAGAA AGATAGGAAT TCCCAGAGCA AATTTTTTAT TGGCTACTCT TGCTATCGTT
TTTGTTCTCT TGACTTGGTT AATTGATAAT TTGATCTCTG AGATTGTTAC CATATTTATC
AGTGGGATAT GTATTGGGCC TATCTATCCA TTAATGATTA GTCATGTTAT TCAGGGAAAT
TTATTGCCTG ATAGAATACA GATAATTTCA ATGACAATTT CATCAGCCTT TGGATATTCT
GGTGGTGCAG TTTTTCCATT TCTTATTGGG TTGATTTCTC AA
 
Protein sequence
LVSGFFFQGI GIGICFSQFN VFMSRLQNSP LAIGLFHGSW GLGASTSPLI ATGLVEAGIK 
WNMFYLILLG FSIFNIANCY LAFVHWESSL TPWDPKVKKT DEIEENLSKL DGLMAEAVRT
KMTCWASLFV FCYQGAEVSF GGWLTTYLRD YRMFTSTSIS YVATCYWFGI TLSRLVVTTF
IHRKIGIPRA NFLLATLAIV FVLLTWLIDN LISEIVTIFI SGICIGPIYP LMISHVIQGN
LLPDRIQIIS MTISSAFGYS GGAVFPFLIG LISQ