Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_59451 |
Symbol | SMC2 |
ID | 4838712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009044 |
Strand | - |
Start bp | 1315686 |
End bp | 1319201 |
Gene Length | 3516 bp |
Protein Length | 1171 aa |
Translation table | 12 |
GC content | 40% |
IMG OID | 640390027 |
Product | Chromosome segregation and condensation |
Protein accession | XP_001384551 |
Protein GI | 150865365 |
COG category | [D] Cell cycle control, cell division, chromosome partitioning |
COG ID | [COG1196] Chromosome segregation ATPases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.819288 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000261165 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAGGTCG ACGAGTTGAT CATCGACGGG TTCAAGTCGT ATGCAACGCG TACGGTGATT TCCGGCTGGG ATGGCCAGTT CAATGCCATA ACAGGACTTA ACGGTTCTGG AAAGTCCAAC ATCTTGGATG CCATCTGTTT CGTATTGGGT ATTGCTTCCA TGGCAACAGT GAGAGCGTCA AACTTGCAAG ATTTGATCTA TAAAAGAGGC CAGGCTGGTG TGACAAAAGC CAGTGTCACT ATAGTATTTG ACAATTCTGA AGTCCTGAAA TCACCCATAG GCTTTGAAAA TTGTTCTACT ATTTCAGTTA CAAGACAAAT CATATTAGGT GGAAGTTCCA AGTATTTGAT CAATGGTCAC AAAGCGCAGC AGCAGACAGT GCTCAACTTG TTTCAATCTG TTCAATTGAA CATCAACAAC CCCAACTTCT TGATTATGCA AGGTAAGATT ACCAAAGTGT TGAACATGAA ACCCACTGAG ATCTTGTCGT TGATTGAAGA AGCCTCAGGA ACACGAACTT TTGAAGAGAG AAAAGACAAG GCACAAAAGA CAATGGCGAA GAAGGAGGCT AAACTCACAG AGATTCGTAG TTTGCTCAAG GAAGAAATCG ATCCCAAGCT CGAAAAGTTG CGGAATGAGA AAAGATCTTT TTTGGAGTAC CAACAGACAC AAACAGACCT CGAGAAGTTG TCAAGGATCA TTGCTGCACA TGACTACACC AAATTATCAC ATTCTTTCAC CAACTACTCG AATTCTTTGA GCGAGCATGA GTCCCGTATG GCAGCTCTTA CTAGTGAAAT TGACAAGTTA GGCAACGAAA TAAAGAATTT GAACGACGAT TTGACACATG TGCGAAAGCA GCGTGAAGCA GAGTTGAATA ATGAAGGAAA GCTCAAAGAA TTGGAGCTGC AAGAAGCTCG TCTATCCACA GAGATTACCC GTCTCAACAC TTCCAAAGAA ATTGCCCACG ATAACTTGAA AGACGAACAA AATAAGAAGC AGAAACTTGA AAATCAAATC GCAGAGATAC AATCAAACTT GGAAAACAAC TCTGATACGT ACAATAGTGT TAAAAATGAT TTTGATAATG CAACTGAACA GCTCCAGAAG TTGAAAGAAG AATACACCAA GAAGGATGAG TTGTTATCGA CATTGTCTAC TGGTGTTTCA GCAACTGGTG ATATGAGCAC AGGCTATTCG GCTCAACTCA AAGAGTTCAA GACCAAACTA AATACATCTC AGAACTTCAT CAAGACGTCC AAGTTGAAGA TAGCACACCT TGAGAGTCAA ATATCAAACG ACAAGAAAAA ACTTGTTCAG GCCAAGGCCG AAAACCAGAA CATTTTATCC GACATGGAAG CATACAGATC TGACATCGCA GCGATGGAGC AAGAGGTAAG CAGTAAATTA GGATTCGACC CAAGCGTCAT AGCCGAACTT AAACTGCAAG AAAAGCAATT TCACAACGAT GCGTACAAGC TTAACGGTGA ATTAAACCAC ATGAAGAGAG AAATAGGAAA CATCGATTTC CAATATTCCA GACCTTCAGC AAACTTCAAT GACAGTTTGG TACGAGGCAT AGTCGCTCAG CTTTTTGAGT TGCCTGAAAC TTCTAATGAT AAGGCTTTGG CTTTGCAGGT TTGCGCTGGT GGGAGACTTT ATAATGTCGT CGTAGAAAAC TCCGAAGTTG CTACTCAGCT TTTGGAAAGA GGTCAATTAA AGAGAAGAGT AACCATTATA CCTCTTGATA AGATCCACGC TAGTTCAATT GATCCACGCA CTGTTGATTA CGCCAAGAAA CTCGCTCCAA ACAAAGTGGA GTTGGCCATT AACCTTATAG AGTTCCAGGA CGAGTTGGTC AAGGCAATGG AATATATTTT TGGAACGACA TTTGTGTGTA ACGATCCCAA TACAGCTAAG ACTATCACTT TTGATCCCAA GATTAGATCT AGATCAATTA CATTGGAAGG TGACGTATAC GACCCCGAGG GAAATCTTTC AGGTGGTTCG CGTAAGAACG ATTCCTCTAT TATAATCAAG GTACAGAGAT ACAATAAGGT ATCAAAGAGG TTATCCGAAG TGAACTATAA ATTAAACGAA ATCAGACAAG AAATACAAAG AATGGAATCG TTGATAGAAA ACACGAAGGG CCTTCAAAAT GAATTACTTT TGAAAAAGCA CGAGTTATCC TTATTAGAAA GAAAATTGGA AAACAACCCT TCTTCTGTGA TTCTAAAGCA GAACCAGGCC AACGAGGCTG AAATAAGTGG ATTGCAAGAG CAAATTCGAC AGGAAGAAAG TAACTGTCAA AATTTCGAAA AGGAAATTAA TGTCATTGAA AAAGACATAC GTGAATTCAA CAGTGACAAG GGCTCTAAAT TGAAGGATCT TAAGAAAGAT GTTGTCGCAT TGAAGAAAGA GGTAGAAAAG AAGCAAGTTG TGTTGGATAA ATTGACAGAT AAATATCAGG CTATCGAAGT TGAAGGAGAA CAACAAAAGT CAGACTTGAT TCAAGCTAGG GCTTCTCTAC AAACCACGAT TGATACTATC CAAGAATTAA CTGCTAAAAT AAGCTCCATG GAACAAAAGG GAGCAGAGTT GAACGATACA TTAGTCATTG TCAGGGTTCA ATTAGAAGAA GAGAAAGCAA ATTTGCTTGG TTTGGATGAA GAAATTAATG AATTGATGAA GATTATCAAA GACAAGAATG AAAGTTTGAG CAATTCTAAA TTAGAAATGC AGAAGTTGAA CCATGAATTG GAGAAGTCGA GTACTATCAC GAAGAATTTG AAGAATAGAC TTGACGCAAT TATCAGTGAA AATGACTGGG TTACTGATGC TAATGTTGTA GAGAACTTGG TACAACAACA TCCAAATATC AATTTGGACG AGGGCCGTGA CCAACTAGAG GTGCTCCAAG AAAAGTTCCA GAGCATGAAG AGAAAGGTGA ATGTCAACAT CATGAGTATG ATTGACAATG TAGAAAAGAA GGAAGCTTCT TTGAAACAGA TGGTCAAGAC TATTGAAAAG GATAAGAGCA AGATCGTAAA CACTATCGAG AAATTGAATG GCTACAAGAG AGAAACTTTG AATTCGACTT ACCAGAAAGT GTCTACTGAC TTTGGCCAGA TCTTTGCCGA TTTGTTGCCA GGATCATTTG CTAAGTTGGT ACCTAGTAAT ATGATGGACG TTACAAAAGG TCTAGAAGTT AAAGTCAAGC TAGGAGAAGT ATGGAAAGAG AGTTTGGTAG AGCTCTCTGG AGGTCAGAGA TCATTGATCG CGCTTTCGTT GATCATGGCA TTGCTTCAAT TCAAGCCAGC TCCAATGTAT ATTTTAGATG AAGTTGATGC TGCCTTAGAT TTGTCACATA CACAAAATAT TGGGCATCTT ATCAAGACGA GATTCAAGGG CTCACAGTTT ATTGTTGTTT CCTTAAAAGA GGGGATGTTC ACCAATGCTA ACCGTTTGTT CAGAACCAGA TTCCAGGACG GTACATCTGT AGTTTCAGCC ATGTGA
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Protein sequence | MKVDELIIDG FKSYATRTVI SGWDGQFNAI TGLNGSGKSN ILDAICFVLG IASMATVRAS NLQDLIYKRG QAGVTKASVT IVFDNSEVSK SPIGFENCST ISVTRQIILG GSSKYLINGH KAQQQTVLNL FQSVQLNINN PNFLIMQGKI TKVLNMKPTE ILSLIEEASG TRTFEERKDK AQKTMAKKEA KLTEIRSLLK EEIDPKLEKL RNEKRSFLEY QQTQTDLEKL SRIIAAHDYT KLSHSFTNYS NSLSEHESRM AALTSEIDKL GNEIKNLNDD LTHVRKQREA ELNNEGKLKE LESQEARLST EITRLNTSKE IAHDNLKDEQ NKKQKLENQI AEIQSNLENN SDTYNSVKND FDNATEQLQK LKEEYTKKDE LLSTLSTGVS ATGDMSTGYS AQLKEFKTKL NTSQNFIKTS KLKIAHLESQ ISNDKKKLVQ AKAENQNILS DMEAYRSDIA AMEQEVSSKL GFDPSVIAEL KSQEKQFHND AYKLNGELNH MKREIGNIDF QYSRPSANFN DSLVRGIVAQ LFELPETSND KALALQVCAG GRLYNVVVEN SEVATQLLER GQLKRRVTII PLDKIHASSI DPRTVDYAKK LAPNKVELAI NLIEFQDELV KAMEYIFGTT FVCNDPNTAK TITFDPKIRS RSITLEGDVY DPEGNLSGGS RKNDSSIIIK VQRYNKVSKR LSEVNYKLNE IRQEIQRMES LIENTKGLQN ELLLKKHELS LLERKLENNP SSVILKQNQA NEAEISGLQE QIRQEESNCQ NFEKEINVIE KDIREFNSDK GSKLKDLKKD VVALKKEVEK KQVVLDKLTD KYQAIEVEGE QQKSDLIQAR ASLQTTIDTI QELTAKISSM EQKGAELNDT LVIVRVQLEE EKANLLGLDE EINELMKIIK DKNESLSNSK LEMQKLNHEL EKSSTITKNL KNRLDAIISE NDWVTDANVV ENLVQQHPNI NLDEGRDQLE VLQEKFQSMK RKVNVNIMSM IDNVEKKEAS LKQMVKTIEK DKSKIVNTIE KLNGYKRETL NSTYQKVSTD FGQIFADLLP GSFAKLVPSN MMDVTKGLEV KVKLGEVWKE SLVELSGGQR SLIALSLIMA LLQFKPAPMY ILDEVDAALD LSHTQNIGHL IKTRFKGSQF IVVSLKEGMF TNANRLFRTR FQDGTSVVSA M
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