Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_58217 |
Symbol | MDR12 |
ID | 4839026 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009044 |
Strand | - |
Start bp | 916386 |
End bp | 918032 |
Gene Length | 1647 bp |
Protein Length | 540 aa |
Translation table | 12 |
GC content | 45% |
IMG OID | 640390341 |
Product | multidrug resistance protein 2 |
Protein accession | XP_001384480 |
Protein GI | 126135912 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0156255 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAATT TCGTCAAGGA TTCATTTTGG GGAACGTTTG TCAACCGTAT ATCGGGTCGC AGATTGTTCC AACACAAGGA AGACCGTTCT GACTACGTGA TTCCAGAAAA ATATCTTCCT GGTTACAAGG AGGTTGAGGA AGAGTCTTCG TTGAAGGAAG CAAAGGCTGA AGGTGAAGTT GACGCGGACG ACAACGCGTC GTCTTCTACC GTTACCAAGA CTGGTGACGA CAAGGTAATT GTTACATGGG ACAGCGATGA TGACCCAGAA AACCCATACA ACTGGCCATT GTACCAGAAG ATCCTTCTTT TGGCCGAAGT AGCATTCTTG ACTGTGTCCG TGTATATGGG TGCAGCCATC TACACTCCTG GTGTCGAAGA CATTATGATA AAATTCAACA TTAACAGAAC ATTGGCCACC TTGCCTTTGA CTATGTTCGT GGTTGGTTAC GGTCTTGGTC CAATGTTCTT GTCGCCTATG ACTGAAAACG CTGCCATTGG TAGAACTCCA GTATACATTG TAACTTTGTT CATCTTTTTC GTGTTGCAAA TCCCAACTGC CTTATCTGAA AGCATTGCAG GTTTGGCTGT TTTGAGATTG ATCTCTGGTT TCTTTGCCTC TCCTGCTTTG GCTACTGGAG GTGCTACCAT TGGTGACGTT ATCTCGATGC CTTACATGCC AGTCGGTATC GCTGCCTGGG CTATTGGAGG TGTCTGTGGT CCATCCTTGG GTCCATTGAT CGGTTCCGTT TTGGTCGTCA AGGGTTCTTG GAGATGGCCC TTCTGGTTCA TGGCAATTAT CTCAGGTACT TGTTTCCTCG TTTTGAGTTG GACTTTGCCA GAAACCTACG GTAAGGCTTT GCTCTACAAG AAGGCTAAGA GATTGAGAAG AGTCACCGGT AACCAAAACA TCACCAGTGA AGGTCACATT GAAAACTCGA AGTTGACAGC TAAAGAATTG GCTGTAGACT TATTGTGGAG ACCTTTCGAA ATTACCATCA TCGAACCAGT TGTCTTGTTG ATTAATGTCT ACATTGCTTT AGTCTACACT GTCATGTACC TTTGGTTTGA GGCCTTCCCA ATTGTGTTTG TTGAAACCAA GCACTTCACT CTTATCGAAA TGGGTGTTTC TTACGTCAGT GTCATGGTTG GTATTTTCAT TGGTGCTGCT ATCTACATTC CTATTATTTA CAGAGCTTTT ACTAAGAAGG TTCTTGCTGG TGAAATGGTC ACTCCTGAAG TTTTCTTGCC AAGTGCCATT TTCGGAAGTA TCATGATGCC AATCGGTATC TTTGTTTTCG GTTGGTCTGC CTCCCCAGAT TTACACTGGA TTGGCCCTAT CATTGGTGCT GCCCTTTTTG CTACAGGTGC CTTCATCATT TTCCAGACTT TGTTCAACTA CTTGGGAGCA TCTTTCTACA GATACTTAGC CTCTGTCTTC GCCAGTAATG CCTTATTCAG ATCTGTCATT GCCGGTTGTT TCCCATTGTT TGGTGACGCC TTGTTCAAGA ACGTTGGATC TGAAAAGTAC CCTGTTGGAT GGGGTTCTTC AATTTTGGGA TTCATTGCCT TGGCTATGAT TGCCATTCCT GTCTTCTTCG CATTGAACGG TCCTAAGTTG CGTGCTAGAT CTAGATACGC CAATTAA
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Protein sequence | MANFVKDSFW GTFVNRISGR RLFQHKEDRS DYVIPEKYLP GYKEEAKAEG EVDADDNASS STVTKTGDDK VIVTWDSDDD PENPYNWPLY QKILLLAEVA FLTVSVYMGA AIYTPGVEDI MIKFNINRTL ATLPLTMFVV GYGLGPMFLS PMTENAAIGR TPVYIVTLFI FFVLQIPTAL SESIAGLAVL RLISGFFASP ALATGGATIG DVISMPYMPV GIAAWAIGGV CGPSLGPLIG SVLVVKGSWR WPFWFMAIIS GTCFLVLSWT LPETYGKALL YKKAKRLRRV TGNQNITSEG HIENSKLTAK ELAVDLLWRP FEITIIEPVV LLINVYIALV YTVMYLWFEA FPIVFVETKH FTLIEMGVSY VSVMVGIFIG AAIYIPIIYR AFTKKVLAGE MVTPEVFLPS AIFGSIMMPI GIFVFGWSAS PDLHWIGPII GAALFATGAF IIFQTLFNYL GASFYRYLAS VFASNALFRS VIAGCFPLFG DALFKNVGSE KYPVGWGSSI LGFIALAMIA IPVFFALNGP KLRARSRYAN
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