Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_56077 |
Symbol | PAL2 |
ID | 4837203 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | + |
Start bp | 417764 |
End bp | 419584 |
Gene Length | 1821 bp |
Protein Length | 565 aa |
Translation table | 12 |
GC content | 44% |
IMG OID | 640388518 |
Product | transmembrane protein |
Protein accession | XP_001382315 |
Protein GI | 150863743 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00164945 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATAC TGCTGCTTCT CTTTCTACAA GAGCAGAATG TGCCCATAAA CTGCTCAGTG TATTCCCTTA CACTGGGTTT CATCCAGTTC CAGGATTTCC GGCCTCCCTA CAGTCCTGCC TTGGACTCTC CCAGTCCCCA TGGCCCACAC TTTCCAGCCT GGAACAACTG GCTGAGCGAG TTCCTTCCAG CTTATTACAT AACAAACTGT CTGATCCCCG ATCTCATCCA GTTGGTGATC GAACTGAACA TCACAGGCAC AGATGACCAA CAAGATAAGC TTATCAACTC TCCCTATAAC GACCGAGACA ACGGCGACAC ATTCGTAGCT TTGCTATTCA TGGTCTGCGG CTCGTGTGTA TCCAGTTGGA TGCTTGCCTT GCTTCACTAT CTATCACCGA AACACAAGAG AAAACCGCTT GTAGTCCAGC TTGCTACCAT AATGTACTCT GTAGTGATGA CAATTCTGCT TTCACGACTC ACTGATGGAT CGTCGCAGGA ATACTACAAG GATACACTAG ATATAGTGCG GCTCCACGAA CTCATATACA ACAACAATAC CTATAGGATC ACAGTAGTAA TTTCCCAGAT CCTCACCCAG GTGGCGTGGT TTCAGATCGT CCTCAAAATC ACGAAAACGA AGTGGAAATG GCTCACTTCC TGTTATGGTG CAGTCGTAAT TTCTGCCCAT ACAGCAGTCA ACATTTTCTG CCAGGTCAGG TACAACAACA CCGACTCGAT CTTTGACAGC ACCAACGCGA GCTTCGACCG CTGGGCTCTG GCACGTGTCG TTATCAAACT CATGCTCGTA GTCTGGTTTG GAGGTAGTTT ACTCTACTAC ACCATTGTTA TCAAGAATCC ACACAAAGTG TGCTATTCAA GACGTTTGCT TCCACTAGGA ATCTTCAACT GGTTCCTCTT CGCTTTGCAC GTTGTACTCT CCATTCTCAT CATATCTCTC TTCAGAGACA ACTGGTTAGT CAACACCTGG TTGTTTCTAC TTCCAATGCT CATAGAGGTC ATCTTCTTGA CAACCGTATG GGAATGGGTG TGTAATATTC GTTTCTTAGA GAAACGGTTT GAGATGATGG GCGTACTTGG AAGACGAATC AGCCTTGAAG ATATCGCCAG TTTGCATCTG CAAAGTGGAA AGATTCGAAA AGTCGAAGTG ATGACCAATT TTATGAGTAA ATTTTACAAA AGAAACCACG TAGTAGCCAA AGACGACACG GACAACTCGG TGGAGATGAA AGACTTTTCA GATAACTCCA ACGAGTCTAC TGATGCTACT ACAAAAATCA ATAGCGACTT GTCTGCTACC AGATCAGTGA CCACAAGAAC ACACAGTGAT AATACATTAG AAATTCACAA TCTGCAACTT GAAAACGAAA ACAGTAATAA TGAAAACAAC TACAATTATA ACGATAATGA TAATGACAAT AATAATGACA ACGCCAACAA TACTAATAAC AATACTAATA ACAACACCAA CAATATTGTT CACAGTAATC AAACCCTTAA TTTCAACAAT ATAATGGACA ATAGCCAAGA TAGCCACAAT ATGAATCTGT ACCATATAGA CACTGGTGAG GGAGATTCTT CATCACATCG TCGTAGTGCT GGTAGCTGCG ACGACGAGTA CATCAACAAC TACGAAATCT GGGCCGACGA CGAAGATCAG GAGATTGATG ATTCTACGCA AAATATAGAC TACGATTATT CACAATTTGA GGCTGGACCC TCGGAAGCTC CTCCACCATT CCAACCGCAT CCGGGGTTTT CCACCGGCGA CTACTGGCAG GACCATAAGG AGCACATGTA A
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Protein sequence | MAISSLLFLQ EQNVPINCSV YSLTSGFIQF QDFRPPYTWN NWSSEFLPAY YITNCSIPDL IQLVIESNIT GTDDQQDKLI NSPYNDRDNG DTFVALLFMV CGSCVSSWML ALLHYLSPKH KRKPLVVQLA TIMYSVVMTI SLSRLTDGSS QEYYKDTLDI VRLHELIYNN NTYRITVVIS QILTQVAWFQ IVLKITKTKW KWLTSCYGAV VISAHTAVNI FCQVRYNNTD SIFDSTNASF DRWASARVVI KLMLVVWFGG SLLYYTIVIK NPHKVCYSRR LLPLGIFNWF LFALHVVLSI LIISLFRDNW LVNTWLFLLP MLIEVIFLTT VWEWVCNIRF LEKRFEMMGV LGRRISLEDI ASLHSQSGKI RKVEMKDFSD NSNESTDATT KINSDLSATR SVTTRTHSDN TLEIHNSQLE NENSNNENNY NYNDNDNDNN NDNANNTNNN TNNNTNNIVH SNQTLNFNNI MDNSQDSHNM NSYHIDTGEG DSSSHRRSAG SCDDEYINNY EIWADDEDQE IDDSTQNIDY DYSQFEAGPS EAPPPFQPHP GFSTGDYWQD HKEHM
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