| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_49944 |
|---|
| Symbol | |
|---|
| ID | 4840550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009047 |
|---|
| Strand | + |
|---|
| Start bp | 927376 |
|---|
| End bp | 929103 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640391865 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001386188 |
|---|
| Protein GI | 150866549 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0023] Translation initiation factor 1 (eIF-1/SUI1) and related proteins |
|---|
| TIGRFAM ID | [TIGR00451] uncharacterized domain 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.737368 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAGA AAGATCCCCA GCCAAAAGCC TCGGCCAATA TCAAGTCTTC CGAGAGAAGA
AAACTTCTAC AGAATATTTG CAATGTCTAT GGTCTAGTAC AAGATGAGCT AGCAAAAGAA
GCCACGGTAG CACTTTTGCC AAACAACACC AAACAGGCTG CCTTTAAGAG TGTCCAAGGC
TATAGCGGTA CAATATACTC GGACGACAAC GAAACACCTA CGTGGTTCAA GTCTCGAGAC
TCCCAAATCT ATCCATCATT GTTCACAGTA TGGAAATGTC CTTACCTTCT TCCCACTGTG
AAAACCCATC CCCATGTCAT TGGTGTTTTG GAGGGGGGCG CTGATTTGAT GTTGCCTGGA
ACAATACCGC CTTTTGATAA ACGCTGTGTG AAGGGAGTCG TAGTTGGAGT TGTTGATAGT
GCCAACCCTA CTGTGATCAA AGCTATTGGT AGATGTAAAC TAAACTTGAC ACAGTTCGAC
ACAGTAGTCG GAAGAACAGG AGTTGCCGTA GAAATTCTCC ACCATATAGA CGACGAACTT
TACAAGCTTA ACAAGTTTGT CGACATTGAC ATTCCGGAAG AACTAGACAC CAAAATACCG
TTGAAGGAAG CTGAATCTGA ACTAGCTCCA GAGAATGAAG ACAATGAAGA AATCGCACAA
GAAAATAAAG ACGAAATAGT CCCAGAACCT AAGGAAACAG CTGTAAGTCA AGGTACTCAA
TCGTATAATA TAGATGACGT GGCTGAACAA GTTAGTCTGC TTACGGTAGA AGAAGTAGAC
AATTTCTTTA CCAGATCATT GTTACAGACA ATAAAACTAG AAGACATTGA ATTGCCTATC
ATTTCCTCCA CCTTCATGTC TCTCTACATA TACAAAAATC TCCCCGTGAT AGACAGCAGC
TACTGCAACA TCAAAAGGAC CTCCTGGAAA AAAACTTCCA AGTTCTTGAA GGCCATGGTG
AAGTTGAAAT ACTTGGATGT TAAAGGAAAG GACGAAGACT TGACTATTAT CAAGTTGCTT
GACAAGAAGA ATCCTCTTGT GGAGAACTTT GTACCCCACA AGACCATGGG AAAGTTGAAC
AGCGCAAGTC AAGGTCCTAC CCAATCAAAG AAAGCAAATG AATTGTCTGT GGTGTCGCTT
TATAAACCTA CAAACAAGTC GCGAATGTTC TTCAATAAGG TAGACCAAGT GTTCAACAAT
TACTTCACCT CGTCTGAACT CCGCTCGTTA TTGGAGAAGT ATATCAAACT GGAGAATCTT
CTGAATCCTA AGAACCCGAA GACAATTGTT TTGGACGACA ATCTTCTTTC AATCACTGGC
GGAGAACGAG TTAGCCCCAG AGATCAAGTG TTTAAGGCGT TCTTAGCCAA TTTCTCTCCT
CACTACCAAA TAAATGAACC AGGAGCATCT GGTAAGAAGG GAGAAGTCAA GAGAGGTCAA
CCACCCAAGA TACTTATCAT AACCGAGATG AAGATTGGTA GAAAGGTCAT TACCAGAGTG
TCTAATTTCG AAGACTTTTA CATCAAGCCT CACCTCTTGT CCGAAGAACT CAAGGTGAAA
TGCTCAGGTT CAAGCACTAT TGGACCATAT GTGCAAAATC CGAAGATAAC CGAGGTTACT
GTCCAGGGTC CACATGGAAA GTTGATTATT GAGATGCTCA AAGAGAAGGG AGTACCAGTG
ACTTGCATTG AATTTCAGGA CAAGGTGAAA AAGGGCAAGA AACGTTAG
|
|---|
| Protein sequence | MFKKDPQPKA SANIKSSERR KLLQNICNVY GLVQDELAKE ATVALLPNNT KQAAFKSVQG
YSGTIYSDDN ETPTWFKSRD SQIYPSLFTV WKCPYLLPTV KTHPHVIGVL EGGADLMLPG
TIPPFDKRCV KGVVVGVVDS ANPTVIKAIG RCKLNLTQFD TVVGRTGVAV EILHHIDDEL
YKLNKFVDID IPEELDTKIP LKEAESELAP ENEDNEEIAQ ENKDEIVPEP KETAVSQGTQ
SYNIDDVAEQ VSSLTVEEVD NFFTRSLLQT IKLEDIELPI ISSTFMSLYI YKNLPVIDSS
YCNIKRTSWK KTSKFLKAMV KLKYLDVKGK DEDLTIIKLL DKKNPLVENF VPHKTMGKLN
SASQGPTQSK KANELSVVSL YKPTNKSRMF FNKVDQVFNN YFTSSELRSL LEKYIKSENL
SNPKNPKTIV LDDNLLSITG GERVSPRDQV FKAFLANFSP HYQINEPGAS GKKGEVKRGQ
PPKILIITEM KIGRKVITRV SNFEDFYIKP HLLSEELKVK CSGSSTIGPY VQNPKITEVT
VQGPHGKLII EMLKEKGVPV TCIEFQDKVK KGKKR
|
|---|
| |