Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_44610 |
Symbol | |
ID | 4838415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009044 |
Strand | - |
Start bp | 875907 |
End bp | 877688 |
Gene Length | 1782 bp |
Protein Length | 593 aa |
Translation table | 12 |
GC content | 38% |
IMG OID | 640389730 |
Product | predicted protein |
Protein accession | XP_001384469 |
Protein GI | 150865311 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG5535] DNA repair protein RAD4 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAGTCT ACATTGTTCA TGGATACAAT AGAAATCAAT GGCTTTCTAA CAAAAAGGTG CACAAGACAC TTAGGAAATT GCTTCCAGAT TCACTAATGG ATGGTCCTGT TAAGAAATTC TCCAAAGCAA TGAAACGAAT ACGAAATAAT GGCATTGAAT CACTAGAACC GAGCGTATAT TTGGAGCAAG ACAAGCAATT CATCTACATT TTGAAGTATC TCATCAAGTG GTTTCGTAAA AACTACAAAT TTGACTCAAA CGGTATGAGA GTGTTAGGTT ATATCCCTGA GCTGAAACTA GGCGAACTGG ACAAGTACAG TCCGAAACGG GCTCCATCTA TATCTAATAT CAAAGACTTC CTATCCGTTA TCAAGAAGTT CAAACACAAT CGAGATACGG GAGCTCAGAT ATTTACAGCT ATATTGAGAT CATTGGGATT TGAACTGAGA CTCATCTTTT CTATACCGAC ATTGCCAAAA TCTAAAGATG CAAAGATGCA GCCCAAGGTC GATTTCGAAA AGCTTGAGAG AAACAAAGAT AACGATTTGC TCTACCCTTA CTTTTGGACC GAGGTAGTGA ACCCTTTGGA TCCTTCTGAA ATAATCGTCA TAGAAACATC ATGTTTCCAT GATGAAGAAA AAAGGCTTTC ACGTCTAAAG AGGTTTGTAC ATGAGAAGGT GAAGCGGGAT ACATTGTCTT CATATTATAC GGATATGTTC TATCCCGTTG CAGATCAGTT CAACCAAATG ACTATGCACT ATGTTGTAAG TTATAGCAAT GACAACCTCG TGATGGATGT CAGTTCCAGA TACATGCAAG ACGTATCGTT TCGATGGTTT AACAAGTTGG ATCTTCGGAT TCAGCAAGGA AGAACTGCAC TTTTGTTCCA CTCTATATTG AGGCATTTGA GTCATAACCA CGAATATACC TCAGAAGACA ATAGCGAACT TGATTGTCTC AAGGAGGTCG CCTTGACGAA CTACAATATT CCCACTACCT GGAGTGCGTT GAAGAGAAAC CCTAACCTTG TAACTGAATC AACCTTGCGT TATAACGAAG TTATCGAAAG TTCCAGTGTT CCTCTTTCGA GTATCTCTCT TGACAATAAG AAGGAGTCCA TCTACTTTAA GAATCACGTA ATTGTGGGGA AGTCAGAAAA ACAATGGAAA TTTTTAGGCA GATCAATCCA ACCAGAACAA GCAAAGTTTC CTATAAAAGT AACAAAACTG CTTCCACCTC GTACCATTGC GAACAAGAGA ATCTTCAATT TCAATATAAT GAACAACCAG CATTCGCTTA ATGAAACCAA GTTGTACAGC TTTAACCAAA CGTGTTCTTA TATTAAGATG AAAATATTTA TTGATTCTAA TGGTAAACCT AATTTACCTC GAAATCGTTT TGGAAATTTA GAAATCTTCA GAGAATGTAT GATTCCAGAT GGATGTTGTT GGATAAAATT GAATTTCATC GAGTCTATAT TATCAGCCTA TAAGTCAGGA AAGCTAAAGG TTCCGGTAGA TATTGAAGTT CAATATGTGC CTGTTGTCAC TGGCTTCAAC TTCACATCTA AAGCTGGTCT GGCAATCCCG GTTAAGAAGG GCGTTATAGT TTTAAACGAG CAAGCTGTCA TTGCTAAAAA GATCTGGCTC TATGGCCGAA TATCACAACA CAGTTTAGAA CTCACAGAGA GAAATAGGAT AGCATTAGCT AACTGGCAAG GTCTCTTAAA ACGTCTCAGG ATAAAAAGAA AATTAGAATA TTACTATGGA GCCCACGAAT AA
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Protein sequence | MVVYIVHGYN RNQWLSNKKV HKTLRKLLPD SLMDGPVKKF SKAMKRIRNN GIESLEPSVY LEQDKQFIYI LKYLIKWFRK NYKFDSNGMR VLGYIPESKL GESDKYSPKR APSISNIKDF LSVIKKFKHN RDTGAQIFTA ILRSLGFESR LIFSIPTLPK SKDAKMQPKV DFEKLERNKD NDLLYPYFWT EVVNPLDPSE IIVIETSCFH DEEKRLSRLK RFVHEKVKRD TLSSYYTDMF YPVADQFNQM TMHYVVSYSN DNLVMDVSSR YMQDVSFRWF NKLDLRIQQG RTALLFHSIL RHLSHNHEYT SEDNSELDCL KEVALTNYNI PTTWSALKRN PNLVTESTLR YNEVIESSSV PLSSISLDNK KESIYFKNHV IVGKSEKQWK FLGRSIQPEQ AKFPIKVTKS LPPRTIANKR IFNFNIMNNQ HSLNETKLYS FNQTCSYIKM KIFIDSNGKP NLPRNRFGNL EIFRECMIPD GCCWIKLNFI ESILSAYKSG KLKVPVDIEV QYVPVVTGFN FTSKAGSAIP VKKGVIVLNE QAVIAKKIWL YGRISQHSLE LTERNRIALA NWQGLLKRLR IKRKLEYYYG AHE
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