Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_41824 |
Symbol | |
ID | 4837212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | - |
Start bp | 1885623 |
End bp | 1886471 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 12 |
GC content | 45% |
IMG OID | 640388527 |
Product | predicted protein |
Protein accession | XP_001383132 |
Protein GI | 126133214 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.699109 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.209561 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACAGA GATTTGCTGA GTTCATCTCC CGAATTGCCA TACCCGCAGG TTTGGCTGTG GCTTTGGGCC AATCGGCCAT TTACGACGTA GAAGGAGGCA AGAGAGCCGT TATTTTCGAC AGATTGAATG GGGTTCAGAA AGATGTCATT GGAGAAGGAA CCCATTTTTT GATTCCATGG TTGCAGAAGG CAATTGTGTA TGATGTGAGA ACGAAGCCTA AAACCATTGC CACCACGACT GGTTCCAAAG ATTTGCAGAA TGTCTCGTTG ACATTGAGAG TCTTGCACAG ACCTGAAGTG TTGCAATTGC CCAAGATCTA CCAGAGTTTG GGTTTGGATT ATGATGAAAG AGTGTTACCT GCCATTGGAA ACGAAGTGTT GAAGTCTATT GTAGCCCAGT TCGATGCTGC TGAGTTGATT ACCCAGAGAG AAGTCGTGTC AGCTCGTATC AGACAGGAGC TTGCAAGAAG AGCTGATGAG TTCAACATCA AGTTGGAAGA TGTTTCAATC ACTCATATGA CTTTCGGCAA AGAGTTCACT AAGGCCGTGG AACAGAAACA AATTGCACAA CAAGATGCCG AGAGAGCCAA GTACTTAGTC GAAAAGGCTG AACAGGAAAG AAAAGCCAAT ATCATCAGAG CCGAGGGTGA AGCTGAAAGT GCCGAAACTG TTTCCAAAGC ACTTGCTAAG GCTGGTGACG GTTTGTTGAT GATCAGAAGA TTAGAAGCCT CTAAGGATAT TGCCCAGACA TTGGCCAACT CGCCTAATGT ATCGTACTTG CCAAGTGGAA AGGGCAATGC TGGTGAAGAA GGATCCAAAA ACTCGTTGTT GTTGAACATT GGACGTTAG
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Protein sequence | MSQRFAEFIS RIAIPAGLAV ALGQSAIYDV EGGKRAVIFD RLNGVQKDVI GEGTHFLIPW LQKAIVYDVR TKPKTIATTT GSKDLQNVSL TLRVLHRPEV LQLPKIYQSL GLDYDERVLP AIGNEVLKSI VAQFDAAELI TQREVVSARI RQELARRADE FNIKLEDVSI THMTFGKEFT KAVEQKQIAQ QDAERAKYLV EKAEQERKAN IIRAEGEAES AETVSKALAK AGDGLLMIRR LEASKDIAQT LANSPNVSYL PSGKGNAGEE GSKNSLLLNI GR
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