Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_40758 |
Symbol | HST6 |
ID | 4836981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | - |
Start bp | 2137078 |
End bp | 2140671 |
Gene Length | 3594 bp |
Protein Length | 1197 aa |
Translation table | 12 |
GC content | 38% |
IMG OID | 640388296 |
Product | ATP-dependent permease |
Protein accession | XP_001383172 |
Protein GI | 150864385 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00433632 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.648895 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | AAAAGCGTAT TGATGTTCTT CCAGAAATCA GATATCCCCT ACTTCATATT CGCAACCATA AATGTATGCA TTGCTGCAGC TGCTACCCCT TTGCAAACAT TGGTATATGG TAAAATCTTT GCCAGGCTTA GCAATTTCTA TTCTGGTCAC TATTCGGATT ATCAAATCTT CATTTCTGAT GTTCGTCTAC TCTGTTTGCT CATCATGGCT ATAGGCGGTT GTAAGATGCT ATTCACATTC TTGGGTGTTT CTTGTTGGAT GCAATTTGGA GAAAGACAAC AATTGCGAGC AAGAACAAAA CTCTACAAAC TAATGCTCTC CAGAAAAATG GAATGGTTTG ACTCTGTCGA TGGTACATCT GGTCAGATCT CACAGGTTAA TCGTTGTGTT GAAGAATTGA GATCTGGTTC TTCGGAAGTT ATTGGTTTAT TGGTTCAATC CATTGCTAGT ATTATTGCCT TGCTGATAAC TTCACTCTAT CATTCCTGGT CATTGACACT AGTTATCATG GCAACATCTC CAATTATGGC CATATTCTCG TGGTTGTTTG GCAGATTGAC TTACAAGGCT GCAGATCAGG AAAACAGATT GAACGCTCTG GCCGCCAAAA TATTAGATTG GTGTTTAAGC TGTGCGTCTG TTGTCAGAGT ATTCAATGGA AAATATGTAG AGCAAGCAAA ATTCAACAGG TTGATCGACA TGTCAGCTGG GGTATACTTC AAGTTGGCTG CAGCAATGGC TGGCAATTCA GGAATTCTAA GAACATTATC GATAATGATG TTTGTCCAAG GGTTCTGGTT TGGAAACTAT ATGATTAGTA TTGGAGATCT TGATATAAAT CAAGTGTTTA CCTGTTTCAC CTCTTGTTTA ATGTTGGGAG CTGCTATATC TGATCTAGCA AATCTTCTAT CCAGTCTCAA TACCGCAAGA GCTGCAGCTT CAATGATTTC CAAATTTATG TTGTCACAAG GTGAAGTTCT TGACGAAGAG AGCCATTATT TGCAGCCTGC CATTTGTAAA GGAAGAATAG AGTTTAAAGA TGTCTGCTTT CATTATCCAG GAAGAGAAGG ACAAGTTCTT AACAATCTTT CTGCTACAAT TGAGGCTCAA AAATTGACAT TTATCATTGG AAAATCTGGT TCAGGAAAAT CAACTATTTC GCAACTATTG TTGAAAATGT ATAGCAATAA TGAAGGAACC ATTTCGATCG ACGGACATGA TATTTCAACC TTGAGCAGAA ATTGGATAAC AGATTCTATT ACAGTTATTG AACAATCAGT TACAATTTAC AATCAAACAC TCAGGAACAA TTTGGCGGTG TCGGTTGTTA ATAAATATGG TTCGCTAAAT AGTGTTCCAT TATCGTTGAT ACTGGATGCG CTTTCTTTTG CCCGTTTGAA TGAAGTCGTA GAAGGACTCG AAGATGGAAT AGACACCACT ATTTCTTCTT CTACTCTTTC GGGTGGCCAG AAGCAGAGGG TTGCGATAGC TAGAGCAAAA TTGAGGGACA CTCCAATCCT TATCCTTGAT GAATCATTAT GCGCATTAGA TAACAGATTG AGAATTCCAT TATTCAACGA AATAAGAGAA TGGAGAAAGG GAAAGACAAC AATTGTAATT GTTCACGAGC TAGACTATCT AAATGACAAT GACAATGTCA TTGTCTTGGA AAATGGTTCT GTAAAGTACC ATGGTTTGTT CGAGGAAGTT AGGGATCAAG AGATTATTCT GAGGTTCAAT GACGAAATTA GTTTTGAATC AAAGACAAGC CTGGTTATAG ACCCAATTCC TAGAAAATCA GTAGAGTACA ATTACTTGAC CAATCCAGTT ATTCTCAAAG ACTTGGAGAA GAATGTTGGT TCAAAAATTG CAGATGACAA TTCTGATGAG GTTTATTGTG TTCTTGCAAT ACTAAAGTAT TGCTTTCATA CTATTGAAAC AAAACCATGG ATAGCAGTTG GATTACTATT CTCTGTCTTC AGTGGAATTG CTGGTCCCGT ATTCTCCTTT AGTTTCTCCA GGTTACTCTC CAGCATGGTC GAAGCTTCTG TGGGCATTAA CATCACTCAC AAACTCAAAT TGTGGTCTCT AATTGTTGTA GGCATTTCTG TTGCTAGTGG CGGGTCTCAT TTTGTATCCA GTTTTATTCT TTCATTCTGT AGTGAAAAGT GGATATTAAA ACTTCGAAAG CTATGTTTCC AAAAGATCAA TGAACAGGAT ATGTCTTTTA TTGATTTGGA AAATACTAAG GCTTCTGAAA TTACAGCTTT ACTCATGAAT GACTCTCGAG ATTTGCGGAA TCTTGTTTCT GAATTTCTCT CTTTGGCTCT CAACCTAGTT GTCATGGTTC TTGTTGGAGT AACTTGGTCA ATTATTTCAG GTTGGAAGTT GGCTTTGGTT GGGATATCTT TTGTACCTCT TGTTTTGTCA GTTACAAGAG TATACGGTAT TTTGTTGGAA CTGTCTGAGA ATTGTTATAA GTCTACGGTT GCAAAATTGG AAAATCACAA TTACGAAACT CTCACAGCTA TCAGATCCAT AACCATCCTT CGATTACAAA ACTACTTTAA AGAGGAGTTT GATTGCAATA TTCAACGCAT TAGAAAAAGA GGTACTATAC GAGCACTTCA GACTGGCCTT GGGCTTGGTC TTACCGAAGG TTGTAACGCC ATAGCAACAG GAACAATCTT GTACTACGGT ATGGTACTCG CTGGTAAGAA TGAATATACC CAACAACAGC TTTTGCAAGT TATTACGATC TTGACATTAA CGATGACCAA TGCTGCAGGC CTCATGAACC AACTCCCGGA AATTGCAAGA GGACAAAGAG CTGGAACTAG AATTATCAAG TTGTTGAATA TGACGCCTTC AGAAGCCGAG AATGATGGCG ACATCACGAT AAACAGAAAT TTTACCAATC CTTTACTACA ATTTGACAAT CTTCAATTTG GTTATTCTGG GCAAGAGAAC GTTCTCAAGA ATGTCAGTTT CAATATAGAT AAGGACGACA TTTGTGCTAT AGTAGGTAAA TCTGGAGGAG GAAAGTCCAC TATTGCTTCT TTGCTTATGA GACTCTACAA TGCTGGTGAT AGAAGTATAT TTCTATCGAA CTATGACATA ATGAGGCTAG ATATCGACCA TCTAAGAGAT ACGATTACAA TTGTTCCTCA GAATCCCAGC TTCTTTGAAG GCACCATCTT CGATAACTTA ACTTACGGTA TCAATCCAAA GAAAAGAGTG AATATGGATA AGATCTACAA AGTTTTGAAA TACGTCAATA TGTACTCATA TGTACTATCA TTGCCTGAAG GTGTCCATAC GATAATCGGC GAGGGTTCTC ATTCGCTTCT CTCTGGTGGC CAGAGCCAGA GGCTCTCAAT AGCCAGAGCA TTAATTAGGG ATCCACAGGT GTTGATCTTG GACGAGTGTA CATCAAACTT GGATAAGGAA AATACTGACT TTATTATCAA TTTGATCAAC ACTACTTTAC GAGGCAAAAT GACTATAATT TTGATTACTC ACGATGTTGA GGTAATGAAG GTTGCTAATA GAATAATAAA GGTCAAGAAT GGTTACATAG TCGAGCAAAG GTAA
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Protein sequence | KSVLMFFQKS DIPYFIFATI NVCIAAAATP LQTLVYGKIF ARLSNFYSGH YSDYQIFISD VRLLCLLIMA IGGCKMLFTF LGVSCWMQFG ERQQLRARTK LYKLMLSRKM EWFDSVDGTS GQISQVNRCV EELRSGSSEV IGLLVQSIAS IIALSITSLY HSWSLTLVIM ATSPIMAIFS WLFGRLTYKA ADQENRLNAS AAKILDWCLS CASVVRVFNG KYVEQAKFNR LIDMSAGVYF KLAAAMAGNS GILRTLSIMM FVQGFWFGNY MISIGDLDIN QVFTCFTSCL MLGAAISDLA NLLSSLNTAR AAASMISKFM LSQGEVLDEE SHYLQPAICK GRIEFKDVCF HYPGREGQVL NNLSATIEAQ KLTFIIGKSG SGKSTISQLL LKMYSNNEGT ISIDGHDIST LSRNWITDSI TVIEQSVTIY NQTLRNNLAV SVVNKYGSLN SVPLSLISDA LSFARLNEVV EGLEDGIDTT ISSSTLSGGQ KQRVAIARAK LRDTPILILD ESLCALDNRL RIPLFNEIRE WRKGKTTIVI VHELDYLNDN DNVIVLENGS VKYHGLFEEV RDQEIISRFN DEISFESKTS SVIDPIPRKS VEYNYLTNPV ILKDLEKNVG SKIADDNSDE VYCVLAILKY CFHTIETKPW IAVGLLFSVF SGIAGPVFSF SFSRLLSSMV EASVGINITH KLKLWSLIVV GISVASGGSH FVSSFILSFC SEKWILKLRK LCFQKINEQD MSFIDLENTK ASEITALLMN DSRDLRNLVS EFLSLALNLV VMVLVGVTWS IISGWKLALV GISFVPLVLS VTRVYGILLE SSENCYKSTV AKLENHNYET LTAIRSITIL RLQNYFKEEF DCNIQRIRKR GTIRALQTGL GLGLTEGCNA IATGTILYYG MVLAGKNEYT QQQLLQVITI LTLTMTNAAG LMNQLPEIAR GQRAGTRIIK LLNMTPSEAE NDGDITINRN FTNPLLQFDN LQFGYSGQEN VLKNVSFNID KDDICAIVGK SGGGKSTIAS LLMRLYNAGD RSIFLSNYDI MRLDIDHLRD TITIVPQNPS FFEGTIFDNL TYGINPKKRV NMDKIYKVLK YVNMYSYVLS LPEGVHTIIG EGSHSLLSGG QSQRLSIARA LIRDPQVLIL DECTSNLDKE NTDFIINLIN TTLRGKMTII LITHDVEVMK VANRIIKVKN GYIVEQR
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