| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_39588 |
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| Symbol | RRP1 |
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| ID | 4851894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 3125678 |
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| End bp | 3127345 |
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| Gene Length | 1668 bp |
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| Protein Length | 556 aa |
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| Translation table | |
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| GC content | 42% |
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| IMG OID | 640393602 |
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| Product | Rhomboid-related protein 1 (RRP) (Rhomboid-like protein 1) |
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| Protein accession | XP_001386926 |
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| Protein GI | 126275943 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0102742 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAACG ACAACCATAA TAATCAACAC TACAATCTCA ACCTCGGCAA TAGTAGCAAT
AAAAATAGCA ACAAAAACAA TAATAATGTC AGGAATATAC AAAAAATCAA CAGCAACTAT
TCAGCCAACG AAGCGACCTA TCCCCATTCA ATCTTTACAG AGAACAACAC TCACGAACCT
CCGGTAAACT CATTCCCATC TGGGACCCAG TATAGACCCA CACCTAAATT GGAAAAAGAG
CTTCCGAATC CAAGAAACAA CGAATACGAG CTTTCAAACA TGGATGAATC CAATAATATC
AGAAGATACT CATATACTCC GTATCTGGCG GAAACGTCTA ACTACAACAA CTATGACGAA
ATAAGAGCTT ATAGCCCCAA TCCTTTTGCG GATAGAAACC TTGCACCACT TCCATCGATT
CCTCACTCAG ATCCTTTTGA AGAGACACCG TTGGAAACCT CAAGCAACGA TCTCTTGAAA
GATGAGTCTG ACAGCCATGA CAGACAGCAA TTTAACGAAA GAGAAAGAAT CAAGCTTTTG
CGCAGAAAGC CGAGATTCCA CTATACGAGG CTTCCGTACT TCACGATTCT CGTGACTTTG
ATCCAGGTAA TCGTCTTCAT TGTAGAATTG GCGCGTATGG CTCAATTAAC TGGTTCGGCA
TTTCAAACCA AGCCTTACTT CAATCCGATG TTAGGTCCAT CTACATACCT CTTGATCTAT
ATGGGTGCAA GATACGTTCC TTGTATGCTG CAGATTGTAG GAATCACGGA CGACACATCG
ATCATGTTTC CCTGTGCAAA CTCGACCACA GTAGACACCA ATGTTTGCAA TTTGAGCGAG
CTCTGTGGCT TGGGAGGTGT TCCTATTGTA GATAATAAGT TCATTCCAGA CCAATGGTAT
CGTGTGATTA CACCTATCTT TTTGCACGCT GGGTTTCTTC ATATTATATT CAATCTTCTC
TTACAGATCA CCATGGGTTC TTCCATAGAA CGTCATATTG GTGTACTCAA GTATGCTATC
ATTTATCTCC TGAGTGGTAT AGCTGGTTTC TTGCTAGGAG CAAACTTCAC TCCACAAGGT
ATCGCGTCCA CCGGAGCTTC AGGTGCCTTG TTTGGAATCG TCGCTACCAA CATATTGCTA
TTCATATATT GTGGCAGAAA AAATACCAAT CTCTATGGAA CTCGCCATTA CGTCTTATTC
ATCTGCATCA TGGTAGGCGA AATCATCATT TCTCTAGTTC TAGGTTTATT ACCTGGTCTT
GATAACTTTA GTCATATTGG TGGGTTTGCT ATGGGTGTCT TGACAGCAGT TGTATTCTTG
CCAGATCCCT TCTTTGTATA CATAGATGGT ATCATTACCT ACAAAGGAAA TGCAACCACA
TGGGAACAGT TTGTGAACGC CTGGAACCCT TTCTATGCCT GGGAAGACAA AATCCCCTTA
CGATTCTATA TTTGGTGCGG TTTTAGAGTC GTTTGTCTCG TACTTGCCAT AGTCTATCTC
GCGATGTTGA TCAAGAACTT TTTTACTAAC ACTGAGTCAC CAGAATCTCG CTGTTCCTGG
TGTAAGTACA TCAATTGTAT TCCTGTAAAT GGCTGGTGTG ACATTGGAGA AGTGACTATT
ACTACATCTA CAGTTGCACA ACCTACTGCT ACTCCACCTC CTACAATG
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| Protein sequence | MFNDNHNNQH YNLNLGNSSN KNSNKNNNNV RNIQKINSNY SANEATYPHS IFTENNTHEP
PVNSFPSGTQ YRPTPKLEKE LPNPRNNEYE LSNMDESNNI RRYSYTPYLA ETSNYNNYDE
IRAYSPNPFA DRNLAPLPSI PHSDPFEETP LETSSNDLLK DESDSHDRQQ FNERERIKLL
RRKPRFHYTR LPYFTILVTL IQVIVFIVEL ARMAQLTGSA FQTKPYFNPM LGPSTYLLIY
MGARYVPCML QIVGITDDTS IMFPCANSTT VDTNVCNLSE LCGLGGVPIV DNKFIPDQWY
RVITPIFLHA GFLHIIFNLL LQITMGSSIE RHIGVLKYAI IYLLSGIAGF LLGANFTPQG
IASTGASGAL FGIVATNILL FIYCGRKNTN LYGTRHYVLF ICIMVGEIII SLVLGLLPGL
DNFSHIGGFA MGVLTAVVFL PDPFFVYIDG IITYKGNATT WEQFVNAWNP FYAWEDKIPL
RFYIWCGFRV VCLVLAIVYL AMLIKNFFTN TESPESRCSW CKYINCIPVN GWCDIGEVTI
TTSTVAQPTA TPPPTM
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