Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_37673 |
Symbol | MSC2 |
ID | 4850842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | - |
Start bp | 201848 |
End bp | 203743 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | |
GC content | 44% |
IMG OID | 640392550 |
Product | Meiotic Sister-Chromatid recombination transmembrane protein (putative) showing some protein similarity to Zrc1p and Cot1p |
Protein accession | XP_001387692 |
Protein GI | 126273667 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1230] Co/Zn/Cd efflux system component |
TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.426608 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | CTCATAGATG CGTTGCCAGT TCTCGCTGCT TTTCCGGCCA TATTGCTTCT GGCAGATCTT GCCTACGTGC CGCATTCGTA TGAGTCAGTA TCGTCCTATG TGTTTGCCTT ACTAGTTCTG TCATTGCTAG CATGTTCTTC GTTGCTAATG TTGAGTTTGC TTGTAAAATT CAATGTAGTG GCCCTAAAAA GAGAAATATC TACTTCGGGT TCGTCTCAGG GACTTCAGTC AGCAATTCTT TTGGCGGTGG GCATCTCTTT CTCGTATCTT GCTACCAATT TCTTGCCCAT CTCGCGTGTT TCTGTGCTCT ATCTAGGCTT GTATTTGCAC AGGTTCAACT TTTGCACACC CATTTTCTTC TTTGTCGACA TCTACAAGGC CTACACTACC CATAGCTATG TTTCCATATT CAATATCTGC TTGGGCTATG TGTTGGTGCT GGTATCGTTT CAGATCTTGT TCAAGAAGTT CGTAGCCAGC TCGGTGTCCA ACACTGTGAG AAACATTAGA ATGAACATCT TTCTACCTGT CACCATTGCA CTTGGGTTAT GTCTTCTTTT TGCAGACGCG TCTACGATTA GTCCCAGTAT AATTGGAGTC AATATCGCTG CCAGTGTAGT GTTCATCATC TCGTTGCAAG AGATTGATCT CAAGAGCTCC AAATTCATAC CGTCGATCTT ATCGAGCATA GCTTGTGCCC TCGAATTCGT AGTGGCTTCC AAGTCTCTTT CCATAGACTC GCTCATTACA ATCTTTCTTC CATTTATCAT AGTTCCAGAT AGAAGTTACG ACATTGCTAA CGCGTACACG ATGATGAGCA GGTCAACGTC GGCTACTGAA AATATGACTC CCATCTTGAC TGAGTTGCTT AGCCACTCAG ACACAAGGGC CATTTTCAAC TTTCTTCTCT TGAACGCTAC TTTCATGTTT GTGCAACTCT TGCACTCGTT CAGATCAAAG TCTTTAGGTT TGCTCTCAGA TTCGTTGCAT ATGGCTCTCG ATTGTATGTC GCTTGCACTT GGTTTGATTG CCGGTGCACT TTCGAAAAAA GAGATCAATC CCCACGGAAA GTACCCCTTT GGCTTGAAGA ACTTTGAGAT CTTGGCTGGG TTCACTAACG GTACATTGTT GATAGGAATC AGTGGAGGTA TCATTTTTGA GGCCATTGGA CGTTTGGTTA ATCCTGTTGT TCTTGAGAAA ACGACAGAGT TAATCATAGT CTCTCTTTTA GGGCTAGGGG TCAATCTTGT AGGTATATTT GCCTTCAACC ATGGACATGC CCATGGACAT TCACATGGAC ACTCGCACTC TCATGGGCAT AATCACGAAC ACGAGTCTGG TCATTCTCAC AACCATGAGC ATAGCCATGG TGAAGAGCAC GAAGATTGTA AAGAAGAAGG TGGTATGAAC GACAACATGA AGGGCATTTT CCTTCACATT TTGGCAGACA CTTTAGGCTC AGTTGGAGTT GTAGTTTCTA CGATTTTGAC CAAGTATGTA AAATGGAACG GATTTGACCC CATAGCGTCG ATGATTATAG CTACATTGAT TTTGTTATCT GCTATTCCAT TGATCCAGTC TACAGCCTCC TCGTTACTAT TGAGGTTAAC AAAAAAGAAA GAGACAAAAG TTCGCAATGC CTTGAACGAC ATCACCAATA TCAAGGGCAT CAAGTCATTT ACAACGCCGC GGTTCTGGCC CAACTCCAGC AACACCATCA ACGGCTACAT CCATATACAA GTCTACCGTG GAGAGAATGC TTCCTATATT AAGAGACAAT GCGAACGGGT CTTCGAGACA GAAAAAATCG ATGTCATGAT CCAGGTCGAA AACGACTACG ATTCGTGTTG GTGTCGCTCA GGTAGCGAGA TTACAGCACA GTCGAACTGG TCATGA
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Protein sequence | LIDALPVLAA FPAILLLADL AYVPHSYESV SSYVFALLVL SLLACSSLLM LSLLVKFNVV ALKREISTSG SSQGLQSAIL LAVGISFSYL ATNFLPISRV SVLYLGLYLH RFNFCTPIFF FVDIYKAYTT HSYVSIFNIC LGYVLVLVSF QILFKKFVAS SVSNTVRNIR MNIFLPVTIA LGLCLLFADA STISPSIIGV NIAASVVFII SLQEIDLKSS KFIPSILSSI ACALEFVVAS KSLSIDSLIT IFLPFIIVPD RSYDIANAYT MMSRSTSATE NMTPILTELL SHSDTRAIFN FLLLNATFMF VQLLHSFRSK SLGLLSDSLH MALDCMSLAL GLIAGALSKK EINPHGKYPF GLKNFEILAG FTNGTLLIGI SGGIIFEAIG RLVNPVVLEK TTELIIVSLL GLGVNLVGIF AFNHGHAHGH SHGHSHSHGH NHEHESGHSH NHEHSHGEEH EDCKEEGGMN DNMKGIFLHI LADTLGSVGV VVSTILTKYV KWNGFDPIAS MIIATLILLS AIPLIQSTAS SLLLRLTKKK ETKVRNALND ITNIKGIKSF TTPRFWPNSS NTINGYIHIQ VYRGENASYI KRQCERVFET EKIDVMIQVE NDYDSCWCRS GSEITAQSNW S
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