Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_36589 |
Symbol | HOL12 |
ID | 4840307 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | + |
Start bp | 389444 |
End bp | 391156 |
Gene Length | 1713 bp |
Protein Length | 570 aa |
Translation table | 12 |
GC content | 41% |
IMG OID | 640391622 |
Product | transport protein |
Protein accession | XP_001385425 |
Protein GI | 150865983 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.169894 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.209561 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATCTCG AAGCTCCAAT TTTGTCGAAC GTTCAAATCA ACGATAAAGC CAACGACGAC TTTATTCCTG GTACAAAGAA TATTTATACG GATGCCATAG GTCCGGAAGA TGAGGTTACC AAGAAGAAAG TGAAAACTCA GGGTAACATC ATTTTGATTC CACAACCTTG TAACTCTCCC AATGATCCAC TTAATTGGTC CAAGTATAGA AAGTTTGTGA ACTTTGCTAT TCTTGCCGTT ATCACTGGTT TTACCGCCGC TACTTCTAAC GATGCTGGTG CTATTCAAGA TTCCCTTAAC GAGTTGTACG ATATATCGTA TGACAAAATG AACATCGGTG CGGGGGTGCT TTTCTTGGGA ATTGGTTGGG GTACTTTTTT CATAACCCCA CTTGCATCTT TGTATGGTCG TAAATTGTCC TACTTCATCT GTATTTTCTT GGGTTTACTT GGTGCCGTTT GGTTTGCTCT TTCCAGGCGT ACTGCCGATG CCATCTGGTC CCAATTATTT GTAGGTATTT CCGAAAGTTG TGCTGAGGCG CTGGTTCAGT TGAGTTTGAG TGAGTTATAT TTCCAACATC AATTAGGTTC CGTCTTAACT GTATATATTT TGGCTACTTC CGTTGGTACT TTCTTGGGTC CTTTAATTGC TGGTTTTATT GTTCAATATG TAGGTTTCAG ATGGGTGGGT TGGATTGCAG TCTTCATTTC CATTGGTTTG CTCTTTATCA TTTTCTTCGT TCTCGAAGAA ACCATGTTCG ACAGAAAGAT ATTCTCCAGA GGCGTTATAA ATGGAGTTTC TCCATCTTCG GACAAGCAAG TGCCTGAATT CGACGATATC AAGAAGGAAC ACTCTAAGGA ATTTACTACC GTGGATGAAT CCAACTCCTC TGAGGATGAA GACACTGATT TGATCAATAT GGGCGAAAAT GACCCACCAA AGTCCTACTG GAAAAACGTT CAGTTGATTA CCTTAGCTCC AAACTTGCAA GGTACTGGTT TCTTACAATA TTTAACCCAA TTGAGAATGT TGTTGAAGGT TTTCTTGTAT CCTCCAGTTA TCTTCTCTGG ATTAGTGTGG GGTATGCAAG ATGCCCTTTT AACATTCTAC TTGACAGTTG AAGACGACGA ATACTATGAC CCTCCTTACA GCTACGGTAA CACAGGTGTT GCCTTGATGA ATGTTCCAAC CTTAATTGGA GCCATTATTG GGTGTTTCTT TGCTGGTCCT CTAAGCGATA AGTTCTCCAT CTGGATGGCA AAGAGAAATA ACGGTATTCA AGAAGCTGAA TACCGTCTTT GGTTCCTTTT TGCCCCTGCA GTAATTGCTC CAGTCGGTTT GATATTGTTT GCAGTGGGTA CTGATCAAGT TTGGGACTGG CCACCTACTT ACGTAGGCTT AGGATTTATT GGGTTCGGTT TCGGTTGTTC TGGAGATGTT TCCATGTCTT ATCTTATGGA TGCTTACCCA GATATGGTTA TTGAAATGAT GTGTGGTGTT TCTGTTATCA ACAACATGAT TGGTTGCATT TTTACTTTCG CTTGTTCACC TTGGTTGGAT GCCATGGGAA ACACACACAC CTTCATTATT TTGGCAGTCA TTGAAGCCGT TATTATGTTC AGTGCTGCGC CAATGATCTG GTATGGCAAG AGAATCAGAA ACTGGACTAA GGATTGGTAT ATTGAATTCT GTCAATTGCG TGACGGTATG TAA
|
Protein sequence | MNLEAPILSN VQINDKANDD FIPGTKNIYT DAIGPEDEVT KKKVKTQGNI ILIPQPCNSP NDPLNWSKYR KFVNFAILAV ITGFTAATSN DAGAIQDSLN ELYDISYDKM NIGAGVLFLG IGWGTFFITP LASLYGRKLS YFICIFLGLL GAVWFALSRR TADAIWSQLF VGISESCAEA SVQLSLSELY FQHQLGSVLT VYILATSVGT FLGPLIAGFI VQYVGFRWVG WIAVFISIGL LFIIFFVLEE TMFDRKIFSR GVINGVSPSS DKQVPEFDDI KKEHSKEFTT VDESNSSEDE DTDLINMGEN DPPKSYWKNV QLITLAPNLQ GTGFLQYLTQ LRMLLKVFLY PPVIFSGLVW GMQDALLTFY LTVEDDEYYD PPYSYGNTGV ALMNVPTLIG AIIGCFFAGP LSDKFSIWMA KRNNGIQEAE YRLWFLFAPA VIAPVGLILF AVGTDQVWDW PPTYVGLGFI GFGFGCSGDV SMSYLMDAYP DMVIEMMCGV SVINNMIGCI FTFACSPWLD AMGNTHTFII LAVIEAVIMF SAAPMIWYGK RIRNWTKDWY IEFCQLRDGM
|
| |