| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_35072 |
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| Symbol | RBD2 |
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| ID | 4836897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 1472019 |
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| End bp | 1472867 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 12 |
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| GC content | 47% |
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| IMG OID | 640388212 |
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| Product | Rhomboid family proteins Function unknown |
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| Protein accession | XP_001383053 |
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| Protein GI | 150864296 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.477388 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCTGT GGACCAATTT GAAATGGTTG CCGAACCCGG CCAGCATACA CGATTACCCG
GCTCTAACCG TCGGTTTGCT GTTGTTCACG TTCATCTTGC TAATCGTAGA TGTCGCGCTG
GAAAATGCCT TGAGCCACAA GTTCTCACTT TATCCTGAAG CCCTTGGAGA ATTAGACCTC
AACCGAGTCT CGTTCTATCC CTTGTTTCAT TCTGGACTCT TCCATTGGTT TCTCAATGTG
TTGACCCTCT TCCAGCCTTT AGCCATTTTT GAAAAGACTC ATGGCACTGT GTACACTGGA
ATCACCTTGA ATCTTTTGGC CGTGCTTACA GCCTTGCAGT ACTGTATTGC AGGCTACTGG
CTCTACCCAG GCACCCATGC TATTGGGTTA TCGGCTCTTG TGTTCCTGTT CTTGGCCTGG
TTGGCCTACA AGGAGCATTT TGTACGTCCC AATATTGTCT TGTACAGACA AGAAGGTAGT
GAGATCAAGT TGCCCACATT GTTCGCTCCA GTAGCTTACT TGTTCATCAG TATGATCCTC
TTGCCTGGCT CCTCATTCTG GGGCCATTTG GCAGGGCTCT TTGCAGGCTA CTTCATGGCC
TTGGACTACA TGAAGGTGTT GTATCCTCCA GCCAAGGTGA TCTTATGGAT CGAAAAGAAG
GTGGATCCTT TGATTCAGTG CTTGCAAGGT GTCGTTGTAT ACTATAAAGA GGAAGATGCA
ACCCATGTTA GAAGTGCTGG CTACACGCCT ATCTCCACTG TTGATGTTGA ATCAAGTGTT
TCTGTCGTTG CTGAAGCAAG TGCCAGCGCA TCCGAATTCC ATGGTGAAGG TCATGTGTTA
GGAGCGTAA
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| Protein sequence | MSSWTNLKWL PNPASIHDYP ALTVGLSLFT FILLIVDVAS ENALSHKFSL YPEALGELDL
NRVSFYPLFH SGLFHWFLNV LTLFQPLAIF EKTHGTVYTG ITLNLLAVLT ALQYCIAGYW
LYPGTHAIGL SALVFSFLAW LAYKEHFVRP NIVLYRQEGS EIKLPTLFAP VAYLFISMIL
LPGSSFWGHL AGLFAGYFMA LDYMKVLYPP AKVILWIEKK VDPLIQCLQG VVVYYKEEDA
THVRSAGYTP ISTVDVESSV SVVAEASASA SEFHGEGHVL GA
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