| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_34802 |
|---|
| Symbol | |
|---|
| ID | 4837194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 215253 |
|---|
| End bp | 216914 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640388509 |
|---|
| Product | putative permease |
|---|
| Protein accession | XP_001382277 |
|---|
| Protein GI | 150863713 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0082411 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTTA CATGGACAAA GAGGAACGAC TCAGATCGTC TGTCTGTTGT TTCCTCTGAA
AAGAAAGAAC AAGTCACCGT TATCAATACG GAAATCAATG ACTTAGAATC TTCAAGCTCA
GAAAATGAAG ACCATATCTT CCAAGACCCT ATTATCGCTG AACACTATAA ACAACTTTAT
GAAGAAACCC AGTACGAGTG TCGTCATCAC TTTGATCCAG AGTTTACTTG GACTGCAGAA
GAAGAGAAGA AGGTAGTCAG AAAAAGTGAC TGGTATGTCA CTCTCTGGGC TTTGATCATG
TTTACTGCGT TAGATTTTGA TAGAGGAAAC ATGTCTCAAG CTCTCTCGGA CAACTTTCTT
ACTGATATTG GTATTGATAC AAATCAAATG AATCTTGGTA GTACTATCAA TCTTATTTGC
TTCTTGAGTG CTGAATTGCC TTCGCAGTTA ATCTCCAAGA AGATTGGTGC TGATGTCTGG
ATTCCAATGC AAATGATCTT GTGGTCGGTT GTGTCGATGT CACAATTTGC TATTAAAGAC
GCTCGTGGTT TCTATGCCAC CAGAGCCCTT TTAGGTGCTT TACAAGGTGG TTTCATTTGT
GATGTTTGTC TCTGGATGAG CTATTTCTTT ACTTCTAAAG AATTGCCTTT GAGGTTGGCT
ATTTTCTATA TTGCCAATCC CATGACTGTT GTCTGGTCCA GTTTGCTTGC TTTTGCTTTA
TTGAAGGTCA AGACAGATTC CACTCCTGAA AGTTGGAGAT GGTTGTTCTT AATTGAAGGT
GCTTTCACAT TGGTGGTTGG AATTGCTGCT TTTTTCAAGA TGCCTGCCTC TTCTGTGCAA
ACGAAGGCTT GGTACAGAAA GAAGGGTTGG TATACTGACA GAGAGGAGAA GATTGTTGTC
AATAGGGTGT TGAGAGATGA TCCTGAAAAG GGAAGTATGC ACAATCGTGA ACCTGTTGGT
CCAAAAGAAT TACTCACAGC TGTTTTCGAT GTGAATCTTT TACCAATTTA TATTATCCGT
ATTCTTGGTG ATATCGGAAC TGCACCAATT TCAAGTTATC TTCAGTTGGT TCTTAGAGGT
ATGGGTTATT CAACCTTCAA AACAAATGCT TTAACTATTC CTTACAACTT AATTTCTGTT
GTAACTTTGG TGTTCACTGG TTGGCTCACC GAAAAAGTGA AGAGTAGAGC ATTTGTAATT
GCAACCACTC CTATTTGGAT TCTCGCTGGT CTTTTCCCAT TGAGATTTTG GCCCAATGCA
CAAAAAGATA TCTGGGGTAC ATTTGCACTT TTAACAGTTC TTCTTGGTCA CTCGCCGGTA
TGTCACATCA CTATTTCTTG GTGTTCTGCA AATTCCAATG GTGTTAGGAG TAGAGCAGTT
TCGGCAGCTG TCGTCAATAT TGTCTCACAA GCAGCTTCAA TTATTTCTGC TAACATCTAT
AGAAAAGATG ATGCACCACT TTATCATCGT GGTAACACTG ATCTTATCGG TATTGCATTT
GGAGCTCTAT TTGCCTGTAT CCTTGCCAGA CAGTATTATA TCTGGATTAA TAAAAATAGA
GAGAAGAAGT GGAATGCCAT GACTATTGAG GAAAGGGAAG AATACTTGCG TAATCCTCCT
CATGATGGTA ACAAGAGATT AGATTTCAGA TTCGTATACT GA
|
|---|
| Protein sequence | MALTWTKRND SDRSSVVSSE KKEQVTVINT EINDLESSSS ENEDHIFQDP IIAEHYKQLY
EETQYECRHH FDPEFTWTAE EEKKVVRKSD WYVTLWALIM FTALDFDRGN MSQALSDNFL
TDIGIDTNQM NLGSTINLIC FLSAELPSQL ISKKIGADVW IPMQMILWSV VSMSQFAIKD
ARGFYATRAL LGALQGGFIC DVCLWMSYFF TSKELPLRLA IFYIANPMTV VWSSLLAFAL
LKVKTDSTPE SWRWLFLIEG AFTLVVGIAA FFKMPASSVQ TKAWYRKKGW YTDREEKIVV
NRVLRDDPEK GSMHNREPVG PKELLTAVFD VNLLPIYIIR ILGDIGTAPI SSYLQLVLRG
MGYSTFKTNA LTIPYNLISV VTLVFTGWLT EKVKSRAFVI ATTPIWILAG LFPLRFWPNA
QKDIWGTFAL LTVLLGHSPV CHITISWCSA NSNGVRSRAV SAAVVNIVSQ AASIISANIY
RKDDAPLYHR GNTDLIGIAF GALFACILAR QYYIWINKNR EKKWNAMTIE EREEYLRNPP
HDGNKRLDFR FVY
|
|---|
| |