Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_34770 |
Symbol | RCA1 |
ID | 4837507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | - |
Start bp | 75458 |
End bp | 78061 |
Gene Length | 2604 bp |
Protein Length | 867 aa |
Translation table | 12 |
GC content | 43% |
IMG OID | 640388822 |
Product | Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12) |
Protein accession | XP_001382776 |
Protein GI | 150864081 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0465] ATP-dependent Zn proteases |
TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00577984 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0143281 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTGAATG CGTTTTTGGA TCAATGCCAT ATCTACAACT CCAACAATAG ATCCCGTTTA ACTCCTGATC AGATCATTGA CGAAATTGAC ACTATGTTCA AGAACCTTCA TCCCGACTTG ACTCCTTTAA CAAAAAAGGA AGTATTGTTC TATTTCCATA TCTACTATTC GTTGCTGAAC AATGTTGTAT TTTTGGACGA GTTGGACTTT CAGAATGTCC AAGTAACTAA GTACTTGAAG GGATATGTTT CGATGTCTCC CACTACAAAC AAGGAAGAGT TGATTGAAGA GCTTGCTAAA TCAAGCGAGA CTGCACCTGA AGTCGTTTCG TCGTGGTTCA ACATCTTTGA CACGTTATCT TCGACTCCGT TTGCTGATTC CAACACCAGA TACACGAACC CATTATGCCC TTACGAATAC GCTCGTTACC AAAGCTTCAC TAACGAGTTG AGGACGATGC AAGAGAAACT CAAGCAAGTC TACGGAGGTT CTACTACTAA GGACTCGAAG AATGAGTCTG TCTTCGGCAA CTTTTCCTTT CAAACGAACT CCGACAATAA TAAGGGCAAA GACTCTAAGA CAAACAGCTC AAAGGATAAT AAGGATGGTA AGGACAATAA GAATAACAAG AAGAACATCG ACATTGAGAT TAATTTTAAT AGCTCGCCTA TGAGATTCTT CCAGGTAGGT GTCTTGATTG GTTTATTATC ATACATCGTA TACAACTTGA CACAGTCTTC CAATAACGAG ATCAGCTTTC AGCAGTTCAC CACTGACTTC TTGAGCAAGA ACTTGGTAGA TAAGGTCGTT GTTGTCAACA ACAGAATTGC AGTTGTAGAA TTGAATGAAA ACGGAAGAGC TCAGTATCCT CATCATGAAG GAAACTTCTA CTTCAACATC GGTGCTATTG AGTCGTTTGA AAAGAATTTA CGTAGTGTGC AAGAAGACTA TAACGTAGCC GATCTGATGA GAGTTCCAGT CATCTACACA AACGAAGGAA GTACCACCAA GATGCTTGTC AACTTCTTAC CTACAGTGTT ATTCTTGGGT GCGATCTACT ACATGACCAA GAAAGCTACT GGTATGGGTG GAATGGGAGG ACCATTGGGG TTCGGTAAGT CTACTGCTAA GAAATTCAAC CAGGACACCG ATATCAAAAT CAGATTTAGA GATGTAGCTG GCATGGCTGA AGCCAAAGAA GAGGTCATGG AGTTCGTCAA GTTCTTGCAG AACCCAGAAA AGTATGAGAG ATTAGGAGCA AAGATCCCCA GAGGTGCCAT TCTTTCGGGT CCTCCAGGAA CTGGTAAAAC CTTGCTTGCT CGTGCTACTG CTGGAGAAGC AGGTGTCCCA TTCTATTCAG TTTCTGGTTC TGAATTCGTA GAGATGTTTG TCGGTGTAGG TGCTTCCAGA GTTCGTGACT TGTTCAAGAC TGCTCGTGAA AACGCCCCCT CCATTGTCTT TGTAGATGAG ATCGATGCTA TTGGTAAACA GCGTTCTAAG GGTAATGCCA GCGGTGCCAA CGATGAACGT GAGACAACTT TGAACCAGTT ATTGGTTGAA ATGGATGGCT TTGATACCTC CGATCATGTT GTCGTCTTGG CTGGTACAAA CAGAGCTGAT ATTTTGGATA GGGCCTTGTT GAGACCAGGG AGATTCGATA GACACATTTC AATTGACAAT CCTGAGTTGC AGGGTCGTAA GGAGATTTTT CAAGTTCACT TGAGGAAGAT CAAATTGAAG AAGGATATTG ACGACGATTT GCCAGGTAGA TTAGCTGCGT TGACTCCTGG TTTTTCTGGT GCTGATATCG CCAATGTCTG CAACGAAGCC GCATTGATCG GTGCCAGGTA CAATGCCGAC TCGGTGACGT TGAGACACTT TGAATTGGCC ATTGAGAGAG TTATTGGTGG TATCGAGAAG AAGTCAAAGC TTTTGAACGC TGAAGAGCAG AGAATCGTAG CTTACCATGA AGCTGGCCAT GCTGTCTGTG GTTGGTATTT GAAGTACGCC CATCCTTTGT TGAAAGTGTC TATTATTCCT AGAGGTCAAG GCGCTTTGGG ATATGCGCAG TATTTGCCTC CTGATCAGTT CTTGTTGTCT ACATTGCAAT TGTACGACAG AATGATCATG ACATTGGGTG GCCGTGTATC CGAAGAATTG CATTTCTCTT CTGTTACCAG TGGTGCCCAC GATGACTTCA AGAAAGTTAC CAATATTGCC CAATCCATGG TTTTGCGTTT TGGGATGTCA AAGAAAGTTG GTATGGTAAA CTACGCTGAT ACTCAGTCAC AGGACAATTT GACGAAGCCA TTCAGTGACG AGACCAGCAA GACCATTGAC GAAGAAGTAC AGAGAATAGT GGGCGAGTGT CACAAGAGAT GTAAGGAATT GTTGATTGAG AAATCTAAGG AAGTCGAGTT GGTTGCGGAA GAGTTGTTGA AAAAGGAGTT CATCACAAGA GAAGATATGA TCAGATTGTT GGGTAAGAGA CCATTCCCTG AAACCAACGA TGCCTTTGAC AAGTATCTTG AAAAGAAGCC AGCGTTCAAG AATGAGAAAC CGGCCGACGA AAAGAAGGAC GACGAGAAGG AAGAAGAAAA GTAA
|
Protein sequence | MLNAFLDQCH IYNSNNRSRL TPDQIIDEID TMFKNLHPDL TPLTKKEVLF YFHIYYSLSN NVVFLDELDF QNVQVTKYLK GYVSMSPTTN KEELIEELAK SSETAPEVVS SWFNIFDTLS STPFADSNTR YTNPLCPYEY ARYQSFTNEL RTMQEKLKQV YGGSTTKDSK NESVFGNFSF QTNSDNNKGK DSKTNSSKDN KDGKDNKNNK KNIDIEINFN SSPMRFFQVG VLIGLLSYIV YNLTQSSNNE ISFQQFTTDF LSKNLVDKVV VVNNRIAVVE LNENGRAQYP HHEGNFYFNI GAIESFEKNL RSVQEDYNVA DSMRVPVIYT NEGSTTKMLV NFLPTVLFLG AIYYMTKKAT GMGGMGGPLG FGKSTAKKFN QDTDIKIRFR DVAGMAEAKE EVMEFVKFLQ NPEKYERLGA KIPRGAILSG PPGTGKTLLA RATAGEAGVP FYSVSGSEFV EMFVGVGASR VRDLFKTARE NAPSIVFVDE IDAIGKQRSK GNASGANDER ETTLNQLLVE MDGFDTSDHV VVLAGTNRAD ILDRALLRPG RFDRHISIDN PELQGRKEIF QVHLRKIKLK KDIDDDLPGR LAALTPGFSG ADIANVCNEA ALIGARYNAD SVTLRHFELA IERVIGGIEK KSKLLNAEEQ RIVAYHEAGH AVCGWYLKYA HPLLKVSIIP RGQGALGYAQ YLPPDQFLLS TLQLYDRMIM TLGGRVSEEL HFSSVTSGAH DDFKKVTNIA QSMVLRFGMS KKVGMVNYAD TQSQDNLTKP FSDETSKTID EEVQRIVGEC HKRCKELLIE KSKEVELVAE ELLKKEFITR EDMIRLLGKR PFPETNDAFD KYLEKKPAFK NEKPADEKKD DEKEEEK
|
| |