| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_34444 |
|---|
| Symbol | RIM101 |
|---|
| ID | 4851499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 1989594 |
|---|
| End bp | 1991780 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | 640393207 |
|---|
| Product | pH-response transcription factor pacC/RIM101-like protein |
|---|
| Protein accession | XP_001388010 |
|---|
| Protein GI | 126274660 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.456628 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.884424 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTACA ATTTGCATCC CGTCTCGTAC CTCAACGCCG ACTCCAACCA GTCCGTCTCG
ACGTTGACGG AATCCGCTCC CCAGCCAACG GCCCCCGTAG CAAAGACTTC CAGCTCGTCT
GCCCTCGATA TGGAAATGGA CTCAACGTCC CCTTCGTCCA CCTCCAACTC GTCGCTGCCA
AACAACAACG GCCTGCCCCA CTCGTCGTAC ACTTCACAGT CGTCGACAAA CAGTCCTATT
CACGACAGCA AGTCTTCCGA ACACCACCAT CACCACCACC GCCACCATCA CAACAACTAT
AGCACCACTA ACGCTAGTAC CAATAACAAC GAGAGTAGAA TTAGCACCAG TAACGATACC
AATGTCTCTG CTGCTAGTAG TACTGCTGTT TCGGCCACTT CCACTTCCAG CGCCGGCACT
ACTTCAAACA CCGCTACCAC CACCACCTCG TCCTACTCTA CTCAGCCTCC ACAATCTCTC
CATCCCCAGC TTAATACCCA CTACCCACAG CCTTCGTACT TGGGCCCATC ATATACCAAC
CAGCCTGCTT CGTTCCTCTA TCCTTCGCAG AACTACCACC ACGAGGGAGA CCAGTTGTTG
AACTCGTTCT TCCCAAACAG CAACATCTCC ATTCCCTCCA TCAATGACTT GAATGCCGGC
TTGAAGAAAG ACGCAACTAT TGCCACAGTT CCCACCGGAA CTGGCCAGAC CAACAAACCT
GCTAAAAAGA CATACAAGAA GATCAAGGAT GAAGACTTGA GGGGCCCCTT CAAGTGTTCC
TGGGGCGACT GTTCCATTAT CTTCGAAACA CCAGAGAAGT TGTACGACCA CTTGTGTGAC
GATCACGTGG GAAGAAAGTC GTCCAACAAC TTGCTGTTGA CATGTCACTG GGACAACTGT
GGAATCACAA CTGTTAAGAG AGACCATATC ACATCGCACT TGCGTGTTCA CGTGCCATTG
AAGCCTTTCC ACTGTGACTT GTGTCCAAAG TCTTTCAAGA GACCACAGGA TTTGAAGAAG
CACTCCAAGA TTCATGCTGA CGACCGTCCC AAGAAGTTGA AGAGAGCTCA GAAGGAGTTG
ATGAAGCAAC AACAGAGGGA AGCCAGACAG AGACTTCGTT TGACAGGCAA GATGGGAGAC
TTCTCCACTT TACCTATGCC TGGAACTTAT GGAGGCAACT ACTATACTGG AACCCAGTTG
TCTGCAGACA TGTCGTTCAA TTACCCAAGC ATTAACCATC AGCATCTGGA TCTTTACGAT
CAGAACTCGT CGAGAAAGAG AAGGAGTGAA AATAACTCCC AGCACAACAT GTATGTCGTG
AACAGCATCT TGAACGACTT CAACTTCCAT AATGTGAACC AACAACAGCA GCAGGCTCAT
GAGTATCCAG CTAAGAAGTT GAAGCATGGT GAGGCTCAGT ACAACATGGA CATCTTCAAC
AAATTGAACC ACTTGGATGA GAACATACAC CATCACCAAC AGCCTCACCA ACAACCTCAA
CCACAACACA ATCCTTCGTT TGGTGCCGCT GCTTCCTTTA ATGCCAATGC TAGTGTTCCT
CAACCTGCTC AAGGAAGTAA CATATACGAA GCCGAGAAGT TCTTCAATTC ATTGTCGAAC
TCTATCGATG CTCAATACCA GACGATGTCT AGCCAATATC AACCAGCTCC TTCTGCGACT
TCACAGTTGT ATCCACCTTT GCCTCAGTTG TCAGCTTCTG CTGGCAAGAA TGAAGTAGCA
TCTGCTGGAA GCCACTTGCC TTCTTATCCA CAGATCAATA GACCTATTGG AAGCGGATTC
CACAGCCATC ACTACTATAG TCAGCAACAG CATCCAGTGT CGATGGAGAT GGGTGGAGTT
TCGACTTACC AGAAATCTGC CCAAGAGTTG GACGATGACG AGGAAGAGTT CACTTCTGAA
GAAGAGTTTG ACTCTGAAAG CTCTGTAGCG TCATCGGCAG AAGAAGAAGA AGACGTGGAC
GAAGAGGAAG AAATCGAAGC TTTGTTCGGC AAGATGACGA TCAACGGTAA AGAATTCGAC
TTGAGTTCTG TAATGAAGCA CAAGGCTATG ATAGACATGG TTTTGGACTA CTTGAGAGAA
CAGATCGAAT CGCAGAAGAA AGAACAGGAT TCCCCTTCTG AAGCCGAAGA AAAGAAGTCC
TTGTACCCTA CAATTGCCGC ATTCTAA
|
|---|
| Protein sequence | MNYNLHPVSY LNADSNQSVS TLTESAPQPT APVAKTSSSS ALDMEMDSTS PSSTSNSSLP
NNNGLPHSSY TSQSSTNNAG TTSNTATTTT SSYSTQPPQS LHPQLNTHYP QPSYLGPSYT
NQPASFLYPS QNYHHEGDQL LNSFFPNSNI SIPSINDLNA GLKKDATIAT VPTGTGQTNK
PAKKTYKKIK DEDLRGPFKC SWGDCSIIFE TPEKLYDHLC DDHVGRKSSN NLLLTCHWDN
CGITTVKRDH ITSHLRVHVP LKPFHCDLCP KSFKRPQDLK KHSKIHADDR PKKLKRAQKE
LMKQQQREAR QRLRLTGKMG DFSTLPMPGT YGGNYYTGTQ FINHQHLDLY DQNSSRKRRS
ENNSQHNMYV VNSILNDFNF HNVNQQQQQA HEYPAKKLKH GEAQYNMDIF NKLNHLDENI
HHHQQPHQQP QPQHNPSFGS NIYEAEKFFN SLSNSIDAQY QTMSSQYQPA PSATSQLYPP
LPQLSASAGK NEVASAGSHL PSYPQINRPI GSGFHSHHYY SQQQHPVSME MGGVSTYQKS
AQELDDDEEE FTSEEEFDSE SSVASSAEEE EDVDEEEEIE ALFGKMTING KEFDLSSVMK
HKAMIDMVLD YLREQIESQK KEQDSPSEAE EKKSLYPTIA AF
|
|---|
| |