Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_33305 |
Symbol | RTP1 |
ID | 4840464 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009047 |
Strand | + |
Start bp | 268360 |
End bp | 269503 |
Gene Length | 1144 bp |
Protein Length | 182 aa |
Translation table | 12 |
GC content | 43% |
IMG OID | 640391779 |
Product | retrotransposon |
Protein accession | XP_001386071 |
Protein GI | 150866457 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000145871 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAATC CGATTCAATC TACTGAGCTT CCAAAGCAAA CAGTTCAACA GGTTATGAGC CAATTAAATT CCGGCCTCAT GGTCATTGAT ACTCTTCTTC TCAGAGGCCG TGAGAACTTT CTGGAATGGA AAGACTGGAT GACTGGTATG TTCAGTAGCT GCGTCTTGGC TACAGAGATT GCTGCTTATC TTTCAGAAAA AGAACTTTCC ATCACCTTTA CGGACCAGCA GGCGTTGAGC CACAAGCTCC GTGAGCTTAT CCTCAAGTGT ATGAAGCCTG ACGTTCAGTC ATTGTTCACG CACTACTCTC TGGGTGTCGA AACTTGGAAA GCTGTCGAAA CCAAGTATGC GATCGCCAGC TCTAGGGATG CGGTCGGCTA TCTCAAGTAC TTATTTGGTC GTCTTGCTGA TCCGACCATT ACGACTGAAG CTGGGTTCTT GATTGCTGAA AAGTTGACTG CGTTTATGAC GAAGTACGAT AACGACTCCA TGAAAGCGCT CCTCTTCCTT TATGGTACGG GAAACTCCAA GGTGAGAGAT CTATTCTTTT CTCAAGTTCG CCTGACTCCC ACGGTGACTG CGGACGAAGT TCTCAATTTC TTTGCTTATC ATGATGAACT TTCTCCTCCT GCCACGTCCT CCGCCTTGCT GGTCCTGTCC TCGTCTCAAT CTGCTTATTG TCAACCACTG AAGCTGAGTA CATGGCCCTC GCAACCGTTA TAAAAGAAGT TATCTGGCTA ATCACATTCT TCAGAGAACT TCACATCCCA ATATCACTAC CAATAATGAT TTGGGAAGAT AACACCTCAT GTATCAAACT CAGCGAACAT CCTGTACACC ACGAACGTAC GAAACACATA GATATTCGCT ATCATTTCAT CCGTGACAAA ATCATAGACA ATATTGTCAA ACTTCGCCAA ATCAAATCTG CTGACAACGT TGCAGACATG TTTACAAAAG GACTAACTCC AGGAACCTTC CAACACTTAA TCCAACTATC AGGAATGCAA CTAGCATAAT TAAATGACCA TTGGATTAAG GGGGGATGTT GAATATGCTG ATATCAAACC TAAAAGCATA TTCTATATTC TATTTTTAAT CCAATGCGTA AACTTTATGA ATGCAGGATT TGCAGCCATT CTGA
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Protein sequence | MNNPIQSTEL PKQTVQQVMS QLNSGLMVID TLLLRGRENF SEWKDWMTGM FSSCVLATEI AAYLSEKELS ITFTDQQALS HKLRELILKC MKPDVQSLFT HYSSGVETWK AVETKYAIAS SRDAVGYLKY LFGRLADPTI TTEAGFLIAE KLTAFMTKYD NDSMKALLFL YGTGNSKDLQ PF
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