Gene PICST_30707 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30707 
Symbol 
ID4838307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp736825 
End bp737991 
Gene Length1167 bp 
Protein Length388 aa 
Translation table12 
GC content42% 
IMG OID640389622 
Productpredicted protein 
Protein accessionXP_001383773 
Protein GI150864798 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0439015 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.801143 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGGCA AATACGGTAA GCGATACTTG GTTGTCCCCT TGCTACTCAT TCTCTTCCTT 
GTGTTTACCT CTCACAGCCA CCACCAAAAA TTCGCGAACT TTACAGCTTC TTTAGCAACA
CACAAATCCA CAATTAAAGA ACCATACGTC AAAAACATAT TCGTTGACGA AGAATTCAAC
TACACCAAGG TCGAATATGT GCTGAATAAC CAAAGAAGCA ATGGTAATAT TCCTGTCAAG
AATTCTCCTT TTGATGACCG CAAAACTAGA CCTACAGTTC TCATTGTACT GACCATTGCA
CTGAACTCAG GCTACGGGGA AGGAAGAACC TTTGTAGACT TTTTCGATAC CATCTCCACC
TTGTATCAAC ATGACACACA CGACATCTCG CTTGCTTTCC TCATTAACAG TGCATCCGAA
TTCAGTAAGG TTGAGACAAT TTTCAACACG AACTCTTCTA TCTACGAGAA TCCAGCACTT
CGAAAAGTTA CACTTTTGCT GGCTCCGTTC CTTGAGGAAA ACTCAGGATT TTCCAGAGAT
CAAAGACACA ACGACAATGT TCAACGCTTG CGCCGTCGTT TAATTGCCAG AGCCCGTAAT
TTCGTTCTAT ACACTGCTTT ACACCAAGAA CAGTACACCT TGTTTCTTGA TGCTGATATC
ATCAAGTTGG ACCATTCCGA TAAAGTCATA TCCACATTTA TCAACTCCAA GAAAGACATT
ATTGTTCCCC GTATCATTCG TGATGGCAAC CAAGATTATG ATAAAAATTC CTGGAGAGGA
CAACGTACAA AGCCAGACGA AAATCAGCTC GAAAAGATGG ATGATGATAG ATGGGAACAA
TGGGATTACG TTCCTCGTGA TGTTCCAGGA AAAATGTACC ATTTCCAAAA CTATGTAGAC
AACAAGAACA ATGAAAGAGA ACAGCATCTA CATGAATTCG AATATGCTGT ACCCTTGGAC
TCCGTCGGTG GAGCAGTCTT GTTTGCCAAA TCTGTCATCT ACAAACAGGG CGTCGTATTC
CCTACCAACT ACATCATCGG TACTTCCTGG GATAGATCTG AAGGTTACGA TGGTATCGAG
ACAGAAGGTG TATGCTATAT CGCCAAACCG TTGGGATATC TCTGTTGGGG TTATCCAAAT
ATTTTGGCAT ATCATTCCAG TAATTAA
 
Protein sequence
MRGKYGKRYL VVPLLLILFL VFTSHSHHQK FANFTASLAT HKSTIKEPYV KNIFVDEEFN 
YTKVEYVSNN QRSNGNIPVK NSPFDDRKTR PTVLIVSTIA SNSGYGEGRT FVDFFDTIST
LYQHDTHDIS LAFLINSASE FSKVETIFNT NSSIYENPAL RKVTLLSAPF LEENSGFSRD
QRHNDNVQRL RRRLIARARN FVLYTALHQE QYTLFLDADI IKLDHSDKVI STFINSKKDI
IVPRIIRDGN QDYDKNSWRG QRTKPDENQL EKMDDDRWEQ WDYVPRDVPG KMYHFQNYVD
NKNNEREQHL HEFEYAVPLD SVGGAVLFAK SVIYKQGVVF PTNYIIGTSW DRSEGYDGIE
TEGVCYIAKP LGYLCWGYPN ILAYHSSN