| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_30461 |
|---|
| Symbol | |
|---|
| ID | 4838065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | + |
|---|
| Start bp | 121966 |
|---|
| End bp | 122531 |
|---|
| Gene Length | 566 bp |
|---|
| Protein Length | 143 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640389380 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383303 |
|---|
| Protein GI | 126133557 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[R] General function prediction only
[T] Signal transduction mechanisms
[Z] Cytoskeleton |
|---|
| COG ID | [COG5126] Ca2+-binding protein (EF-Hand superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.431532 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTACGTA TCAAATATGT ATAAGTTGGA AGTGGTCTGA ACACAATTTC TGGTTTCTGT
TGTTCGTTTT TGATTTTTCA ACCAGTTTTC AGATCCTAAA TATCCACTCC ACATACACCC
ATTACTAACA TCTTAAGTCC CAAAACACCA AAACTTACAA AGACGCTTTT GCCCTTTTTG
ACAAGAAAGG AACAGGTAAG ATTCCAGTTG AACATTTGGG TGATTTGTTA AGAGCAGTTG
GCCAAAACCC TACATTGGCA GAGATCTCTG AGTTGCAAAA CTCTGTTGAA TCTACAGAAT
TTGACTTTGA CACATACCAG AAGATCATAA ACAGACCCGA TGGATTCAAG CCTTTGGGAT
TGCCTGAGGA CTATATAAAG GGTTTTCAGG TCTTCGACAA AGAACAGACT GGCTACATTG
GCGTTGGTGA ATTGAGATAC ATATTGACTT CGATTGGGGA AAAGCTTTCC GACTCGGAAG
TGGATGAGCT CTTAAAGGGT GTCAATGTCA CTTCTGACGG TAACGTCGAC TATGTAGAGT
TCGTCAAGTC CATTTTGGAC CAGTAG
|
|---|
| Protein sequence | MSQNTKTYKD AFALFDKKGT GKIPVEHLGD LLRAVGQNPT LAEISELQNS VESTEFDFDT
YQKIINRPDG FKPLGLPEDY IKGFQVFDKE QTGYIGVGEL RYILTSIGEK LSDSEVDELL
KGVNVTSDGN VDYVEFVKSI LDQ
|
|---|
| |