Gene PICST_29516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_29516 
Symbol 
ID4836919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp451650 
End bp452294 
Gene Length645 bp 
Protein Length214 aa 
Translation table12 
GC content44% 
IMG OID640388234 
Productpredicted protein 
Protein accessionXP_001382849 
Protein GI150864141 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.130222 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGAATA CGCCGTCGGC ACCTAAGATA ACGGCTCAGG ACCGGGCCAT TTTCCAGCTC 
AAACAGCAAA GAGACAAACT CAAAGACTAC CAGAAGAGAT TGACATTTGT GATTGAGAAA
CAGACCAATC TAGCACGTGA GGCTGTCAAA AACGGCCAGA ACGACAAAGC CAAGTTCTAC
TTGAGACTGA AGAAACAGCA GGAGACCACT ATTGTGAAGA CATGCGAACA ACTAGACAAT
CTAGAAGGAT TAATCGGCAC CATAGAGTTC AAGTTGATTG AGAAAGATGT CATATATGGC
TTGGAGCAGG GTAACCTGGT GTTGAAGAAA CTTAACAACG AGATGAAAAT CGACAAAATC
GACAAGATCT TGGACGATTT GGAAGAAGAA CGAATCAAGG TGGACGAGGT ATCTGATGCC
TTGGGGATGG GCAGTGGTTT AAGTAAGCTG GAAGAATTTG AAGTTGACGA AGAATTTGAA
AAACTTGAGC AGGAACTCAA CATTGTAGAA CAGAAGAATG ACACCCAACA AGTTCCTGAA
CTTCCTGAAG TTCCTAAAGT GGACGTCTTA CCAGAAGTTC CCAAATCTGA GATTGTTGAG
CAACAGCCTA GCAGAGTGCT AGCCAACGAA CCAATAGCAA GCTAA
 
Protein sequence
MGNTPSAPKI TAQDRAIFQL KQQRDKLKDY QKRLTFVIEK QTNLAREAVK NGQNDKAKFY 
LRSKKQQETT IVKTCEQLDN LEGLIGTIEF KLIEKDVIYG LEQGNSVLKK LNNEMKIDKI
DKILDDLEEE RIKVDEVSDA LGMGSGLSKS EEFEVDEEFE KLEQELNIVE QKNDTQQVPE
LPEVPKVDVL PEVPKSEIVE QQPSRVLANE PIAS