Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_29359 |
Symbol | NPL6 |
ID | 4837671 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | - |
Start bp | 73696 |
End bp | 75078 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 12 |
GC content | 43% |
IMG OID | 640388986 |
Product | possible Polyadenylate-binding protein (RRM superfamily) |
Protein accession | XP_001382775 |
Protein GI | 126132500 |
COG category | [R] General function prediction only |
COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.115134 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0214952 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAGAT CATCGCGTAG CAGTGCTGGC AGTTCTCCTG AGGCCACGAG ATCGCCTCGA GCCATCCGGG CCCACCGTTC TGATTTGTCT GGTTTGGATT TGAACGAAGA CGATGGAGAT GAAGAATACA AAATAGATGA CAATGTAGAT GTTAAGGACG AATTGGCAGA AGAAGATGAC GACGTTGAAG ATGAGGACAC GTCGATCGTT CGTCATAGAT CTCGTAAGAG AAAGGCTACT ACGAACGATG AAGATGATGA TGACGAAGAA GATGATGACG AAGAAGCAGA AGAGGAAGAG GAAGACGCAG ACGAAGATGC AGAGGATGAA CCTAATGAAA ATGCAGAAGA AGAAGATGGA GAAGACATGA AGGTGAAGCA AGAAGTTAAA CGCCAGCCAT TGAAGGAAGA ACCTAGAAAG CCTAAGAAAA GAGGAAGAAA GAAGCTCAAC ATTACCATCT TGGAAGATGG AGTCTACGAT GAAGATGGAA ACCCGCTCAA CGTCAAGAAC GATGAGGTTG TTATTGACCA CGAGGATCCA AAGGGACACA CCAAGATAGA CGAGAACGGG GTATTGCAGG GAGGAAGGCA GTTCAGAATG AAGACATTTA AGTTGTTAGG TCACGGTGAC CAATTATTCA TGGTTTCGAC AGAACCAGCT AGACTTGTAG GATTCAGAGA TTCATACTTG TTGTTCAAGA CTCATAGATC GTTGTTCAAG AAAGTCTGTA CCAATGAAGA AAAGATGGAC TTAATCGATC GTGCCATTAT CCCTAATTCG TATAAGGGTA GATCTGTCAA CTTGGTAGCA GCTCGTTCGA TTTTTAGAGA ATTTGGTGCC AAAATGATTA TCGATGGTAA GAAGGTCATC GACGATTTCT GGGAGCAAAG GGCAATCGAA CGTGGAGATA TTGCAGGAGA ATATGCTGAC CCCTTACAAT ATTTCGGACC AGTTGGAAAG GTAGGTAGTG TGTTAGGCGA TTCCAATACC AACGGAGGTT CTACACCAAT CACATCCACG CCATTAGTGA ATTACCAAAC AGATCCAACC TGGATGTATC AAATAGCCGT TAAAACTAGA GAACATAACA ACAAGTTGCA AGAGCAAAGG AATCAGTCTT TCAACCGCGG GGCCAAAGAT ATTTTCACCA ATTCTACATT CTATCCTGAG TCAACACAGC CAACGTCGGT AAAATATGGT GTCTATAAGG AAGAAAAGAA GCCTTCAAGT CTCACGTACG ATATCAAGTT TGTGAATCCG AACATAAAGA AAAGAGCTAC CGGCTTGAAG AACGTTCCTA AGGATATCTT CAATGATATC GACGATGAGG AAATTAAGCG AGCCATCATT GCCCAACAAG AATATGAGAA AAGTATTGTG TAG
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Protein sequence | MPRSSRSSAG SSPEATRSPR AIRAHRSDLS GLDLNEDDGD EEYKIDDNVD VKDELAEEDD DVEDEDTSIV RHRSRKRKAT TNDEDDDDEE DDDEEAEEEE EDADEDAEDE PNENAEEEDG EDMKVKQEVK RQPLKEEPRK PKKRGRKKLN ITILEDGVYD EDGNPLNVKN DEVVIDHEDP KGHTKIDENG VLQGGRQFRM KTFKLLGHGD QLFMVSTEPA RLVGFRDSYL LFKTHRSLFK KVCTNEEKMD LIDRAIIPNS YKGRSVNLVA ARSIFREFGA KMIIDGKKVI DDFWEQRAIE RGDIAGEYAD PLQYFGPVGK VGSVLGDSNT NGGSTPITST PLVNYQTDPT WMYQIAVKTR EHNNKLQEQR NQSFNRGAKD IFTNSTFYPE STQPTSVKYG VYKEEKKPSS LTYDIKFVNP NIKKRATGLK NVPKDIFNDI DDEEIKRAII AQQEYEKSIV
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