Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_28646 |
Symbol | |
ID | 4851409 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | + |
Start bp | 1748165 |
End bp | 1748929 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | |
GC content | 41% |
IMG OID | 640393117 |
Product | predicted protein |
Protein accession | XP_001387563 |
Protein GI | 126274528 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1500] Predicted exosome subunit |
TIGRFAM ID | [TIGR00291] rRNA metabolism protein, SBDS family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0803186 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGTGA TTAACCAACC TATGAGTCAG ATTAGATTGA CCAACGTGTC ACTTGTCCGC ATGAAAAAGG GCAAAAAGAG ATTTGAGATT GCCTGCTACC AGAATAAAGT CCAGGACTGG AGACTGAAAG TGGAAAAGGA TATCGACGAA GTGCTTCAGA TTCCCCAAGT TTTCCAGAAT GTTTCCAAGG GCCAGGTTGC CAATAACGAC GACTTGATGA AGGCTTTTGG AACTACCAGC CAAGACGAAA TAATTCTTGA AATTCTCAAC AAGGGCGAAA TTCAACTTCA CGAGAAAGAA AGATCAGCTA ACTTACAACA GAAACAAAAT GAATTTTTAA CCATCATATC CACCAAGTGT ATTAACCCTA AATCGAAGAA GAGATATCCT CCTTCAATGA TCCAGAAGGC ATTGAACGAA GTCAAATTCC ATTTGAACCC ATCCAAACCT ACAAAGCAAC AGGCGTTGGA TGCTATCAGA CTACTTGTAG AAAAGCAGAT TATTCCTATT GCCAGAGCCC AGATGAAGGT CAAAATCACC TTGTCTAAGA AAGCGTACCA GAAAGTCTAC AAAGATGAAA TTGAACCTAG CATTGATCTG ATTATAGACG AAGATAAAGA CGGTAAGGTG TACGAGTGTG TCTGTATTAT CGATCCTATT AACTATAGAA AGATTGTAGA TGTGTTGGAG GGTGATGGAG CCAAGATCTC CAAGAGTGAT GGTTCCATTG AAGTGATAGA CATGGCCGCT ATCAAGGAGA CTTAG
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Protein sequence | MAVINQPMSQ IRLTNVSLVR MKKGKKRFEI ACYQNKVQDW RLKVEKDIDE VLQIPQVFQN VSKGQVANND DLMKAFGTTS QDEIILEILN KGEIQLHEKE RSANLQQKQN EFLTIISTKC INPKSKKRYP PSMIQKALNE VKFHLNPSKP TKQQALDAIR LLVEKQIIPI ARAQMKVKIT LSKKAYQKVY KDEIEPSIDL IIDEDKDGKV YECVCIIDPI NYRKIVDVLE GDGAKISKSD GSIEVIDMAA IKET
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