Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_28241 |
Symbol | SIZ1 |
ID | 4851017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | - |
Start bp | 720870 |
End bp | 725801 |
Gene Length | 4932 bp |
Protein Length | 1643 aa |
Translation table | |
GC content | 44% |
IMG OID | 640392725 |
Product | hypothetical protein |
Protein accession | XP_001387777 |
Protein GI | 126273979 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.531382 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAGCG ACATAGCGCG GTTGACTCCA ACGGAGTTCA GCGATACCAT CGCACGGCTC AACCAGATGA AGGTAGCAGA AATCAAGGAT ATCTTGCGAC TGCTAGACTT CAAGCTTACA GGGCGTCGAC ACGAGGTGAT AGCGCGGATT GAAGACTACT TCAAGCATGG GATCGAGTTG CAAGATCCAG TAAGGCTTTT GGCCGTAAGA GTCCTCATTC TCATGAGAGG GGAGGGCCGT CAGCTTCCTA TCTATAAGGA CTTGTATCGT AAGATATCGA AGGGAGAGTT TGTTCCCGGA CAGATGAACA ACTTTGCTAC TATGATGAGC AGTAGTGGAC GTAATGTGAC ACGTCAGAAT GGTAATGTTA ATGCTACAAA TCAAAATTCG AATTCGTCTC GTTCACATTC AAACCATCTG GGCTCAGATT CTAATCATAA TCAGTATGGA GTCAACGAGT CATCACCGTA TCGCCGTCAC GCGCTTTACT TCGCCGATAA CCCCTTCTAT AAGCTTCGAA GACTCATTCA CGGTTCACCG CAGCCCTGTT TTCCCCAATC TGGGAGAGGA ACATGTGATA TTGCATTCCT GTTGCTGGAC AGCGAATCAA GTCTTCTAGC TCTGGACAGC ACCATTAAGG CGTACGTGCT CTGTGGCGTC CAGGCAAACT CTCTGCCAGC TCTGACGGAT GTTGCAGTGC ATTTTCCACA ACCTTGTGAA CTCCACGTAA ATGGATCTCA AGTTCAGCAT TTCCGGGGGA TCAAGAATAA GATAGGAACT TCGAAACCAG CCGATATAAC TAACCATCTT CGTGCGCGTC CCGCACTCAA TAAGATCCAG TTCGTCTACA CCAGAACGAC CGAGACCTTC TTGCTTTATG TCTATATCGT CCAGACTGTG TCTATTCAAG AGATCCTACA GGGCATTTTG AATAGACCTA TGATCCACAA GAACTCGACT CGTGATAGAA TACGAGCCCA GAATGACGAC GACGATATTG TAGTTTCCGA CATTTCTGTA ACGCTCAGAG ACCCCGTGTC ATACACAAGG ATGAAGTATC CCGTGCAATC TGTCTATTGC GACCATACAC AGTGCTTTGA TGCGTTGATT TTCCTCCAGT CTCAGGCACA GATTCCTACA TGGAGCTGCC CTTACTGTCA ACGCAATGTG AAGGTGGACG ATCTTGCCAT ATCTGAGTAC TTCACAGACA TATTGAACAC AGTGCTGGCA GATGTGGAAC AAGTTCTCAT ACATTCCGAT GGCTCGTGGT CACTAGAAGG CTCTGCAACT CCTGCTCCAA GGCTGAATAC TCCGGCAAGG TCCCCTTCCA GCTCTCCAAG AGTTGTAACA AAAATTGAAG AGGATGCCAA TTCTAGTATT CCTCCAGATG TAGAAATAGT CCTGTTAGAT AGTGAATCCG AAAGCGAACT GGAAATTCCT CTTTCCAACA TTCCTCGTCG TCATCACCCC CAAGCCATAT CAAGGGATCT GTCAACTTCA CCTATACAAA GAGATGACTC TCCGCAAATT TCAGAGACTA CACGTCCTTT GGCACTTGTA AATCCTCCAG AAGCAACGGT ACAACCTCAA CATGTTTCTA TGGATGTTAA TGACATTTCT GGTGTCGGTA ATTCAGTTCC TCCTGTTCGA ACAGTTCCAA CAGCTAGTGA TGTTTCTGTT GCTAGTGGGA TTGCCATCGG TAGTATAGTT ACTCCGGCCT CTACATCGGC TTCACAAGTT CCGACTGCAA TTGCTCCGTC ACCACCACCA CCTCCTCCTC CTCCTCCTCC TCCACCACCA CCACCACCGA GCAGTCACCT ACAAGAAACA AGTGCATCTA ATTATATAGC TACTCAACTA CCTCTACCTT CTGTGTTATC TCAATCACAA TCTACATCTT CTGAACTGCC TCTAGTACCT CCTCCACTTC AACCTCCTAG AGAGCATCCA CAATCCAATA TTCATAAATC ACATTCGCAT TCAAATACTC CATCAGCTTC AAATCATCTA GTTAAGCTTG ACAGCCATCC ATTTAAAGAC AAAAACGTCT CAGCTACTGC CTTTTCTTCC ACAATACCTT CGACTACTGA TGATTCACAC ATGGAAATCG ACAGTGACAC TCCAATATCT TCTATCCATG CTCCGACCCA ATCATCATCT CACTTATCTT CGCAGATACC TTTGCACTCA ACCACAAACC CCACAACTCA GCCTTTGACT GAGGAACCTC CACATTTGTC GCTGACAACA CCTGTGAAAA GACCAACTGG TGCTAGATCA AAACCTACGC CTAACATTTT CATCACCTCA CATTCAAGAT TGAACAATAG ACCCATTTAT CGTCCCAAAC CAGCGACTGG TAAAAGACCT CTACAGGAGG CAAATATACG CGTGGATAAC AATTTGCGAA TTCTAACTGC TCGCAATCCA GCCATTCTGG CTCGGAGTGA GAATGCTTCA AGCCCAAGTA TCTCTGCTTC TAAGAAGACA AGAACTGAAA ATTCATCTTC TGAAATGTCC TCTGAAAGGA CCACCGTCGA AGTGTCAGCT TCTTCATCCT CTGAGAAGTC AAGCTCTGAA AGTTCATTAG AAAAGTCACA TCCACCACCA CCACCACCAC CACCTCCTCC TCCTCCTCCT CCAGTAAGTG ATAATTCTAC TAATAATTCA AATCAGAGTG AACATACCTC TTCAACTGAA AATTCACAAA CTCAAGATCA ACCAGCAATT GAAAATCATA GTCAGAATAA CAATTCTGCT GTGGAACATA GTCATGCTGT TGGAATGACC ATTCTGAATG AAAGATCTTC TGAGAACCAA AAATCAGTTG AGGAGCTTCC TGTTAACACG ATACCATCCG GAAGACCTTC TACCACAATA GATCTGCAAG TTCGTTCTGC ACATGTAACC TCTGAGTCTT TCAAGAGCCA GCATATCTCA CTAGCTAAAA GTATAAATGT CGTTGCGACT GCAGCAAACG TTACTTCTTC TACTTCATCC ACTGCTCAGA AAGCTAGTGA AACCAACGGA ACAGGCAAGG AATTAACTTT GGCTGGTGAT ACTTTCATTG GTGATAGTCA AAAGGAAGTC ACGGCCAAGA AGAATGCAAA TACTAGCGCT GTAATTTTGT CTCTCCCATC TCCGATCAAC TCCAGTACTC TGCATGCAGA TGGTGTGGAA GACAAGAATG GTATTCATAG TGCAGTTATT GGTAGATCAG CTGAAAGTAC TCTTCGACCC ACTGAAAATT TGCCGATGGC CTCCAGTCCT TCAAATAATG GAACTGGAAT CAGAGCGGAC ATTGTACAAC ATTCAAAAAC TACTTCTCCT TTATCTGCAT TGGAAGTCAA TAATGATAAT AGTACTATTA CACCGGATTT ATGCATTGAT AAGATTAGAC CAGGTGTAAC TTCTCATTCT GAAGCTCCTC TGGCAGACAA ACTAAGACAT CTGGTTGCAA GAATGATCGA AATTGAGCAG CAACTTCAAG GTGTACGGAA TGTGCGCAAT CAACAGTGCG CAGACAGCCG AGAACATATT ATTTCATACA ATGACTACTT ACAGGAATCT GCTAATGCGA TATTGCAACT TAAAGATTTG ATGACACAAC TAGAGCAGCA GTCTCGTATT CAAACACATC AGTTGGTGGC GTTACAAGAT GAACAATTAC AAGAAAAGGG AAATCTTGAA ATGAAAATTG CTGCCTCCCT TCTCAATTCC CCCGAGAAGG AAAGCAGAGT TAGTTATCCA GATATTTTCC GGAAAGCTTT GGAAGATCAG GAGAAGAATC GAAGTCAAAG AAAAAGACAC GAGTTTGATG TGCAAAGACA GGCACTTGTT GAAAGGCATA GATTGCAATT GAAAACACTT CAGGAAAGAC AACAACAAGA AAAAGACATC TTGTCGGAGC AGGTTCGTCG TCTTGTGGTA GAAGTTGATC TGAGAAAACT GTTGAGTGTG GGCAATGTCT TCTCCCATGT CTTAGACTTG CCTGAATTCC AACAACTTAA AGCACACATA AAGAGTATGA CTCCATTTGC AGCTAGTCCA TCATTGAGTA CCAACTATGG CAGTGTATCA CTGGAATCGG GAATGCGAAG TATTTCGTAT GCAAATTTGG CACCATCACA AAAAGGCAAC AGTTTGATAG CTCCAAATTC AAACCATGGG TATCTGATAT CTTTGAGTCC AGATATTAGA AGAGGACATG AACAACAACA ACTTCTGCAT AGTCAGATTC AACAACAGAT TCTGCAACTT CAGCCTGAAA GCCGGCACGC TCGTCTACTG GAAGAACAAC TTAAGCAAAG CATGAAGCGT CATGATCCGT CATTTGGCAG ATCTGTAGTA TCTACTCGTT ATGAACAACC TTTGCATTCG TCACAAGCTG CAACAGTTTC ACAAAGCCAA ACACCTACAC CTACACCTTC TTTGCAAAGG TATGCTTCAA TGCCAACTGT CCAGTATTCA AAGTCTGTAT TCGATCGTGT AGCAGACAGA ACGTCGTCAG CATCAGAATC ACCAGCTTTG AAGAAGCAGC GTATTACTGG ATTGTTGGGT ATAGAATTGA ACCAAGATGC CATCAGTTCC AACGTCACCG TCACAGATCC AGTATCACCT ATAAATGGCA AGATTGGACA CATGACCATT AACTCACCGG TTTCAACAAG ACATTTGTCT ATTGGTAGCA GAAACTTCAC TGCCATTGAG AGTCCAAGAG AACCCGGAAA TAGAAGAGTT TCCGATGGTT CTGTTCCGCC TCAGATACAT GCTGGGGTTG CACGTAATGT ACCTGAAGGT TTCATCACAG AAGTTTTCAG ACAGAAAAAC ACTGAATCCA ATAAGTCTAC TTCAGCACCG ACTGCTGCTA ATGTAGATCA TAAGGCAGGG ATGGAAGTGA TATCCCTCTT GTCTGACAGT GAAGAAGAGT AG
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Protein sequence | MSSDIARLTP TEFSDTIARL NQMKVAEIKD ILRLLDFKLT GRRHEVIARI EDYFKHGIEL QDPVRLLAVR VLILMRGEGR QLPIYKDLYR KISKGEFVPG QMNNFATMMS SSGRNVTRQN GNVNATNQNS NSSRSHSNHL GSDSNHNQYG VNESSPYRRH ALYFADNPFY KLRRLIHGSP QPCFPQSGRG TCDIAFLLLD SESSLLALDS TIKAYVLCGV QANSLPALTD VAVHFPQPCE LHVNGSQVQH FRGIKNKIGT SKPADITNHL RARPALNKIQ FVYTRTTETF LLYVYIVQTV SIQEILQGIL NRPMIHKNST RDRIRAQNDD DDIVVSDISV TLRDPVSYTR MKYPVQSVYC DHTQCFDALI FLQSQAQIPT WSCPYCQRNV KVDDLAISEY FTDILNTVLA DVEQVLIHSD GSWSLEGSAT PAPRLNTPAR SPSSSPRVVT KIEEDANSSI PPDVEIVLLD SESESELEIP LSNIPRRHHP QAISRDLSTS PIQRDDSPQI SETTRPLALV NPPEATVQPQ HVSMDVNDIS GVGNSVPPVR TVPTASDVSV ASGIAIGSIV TPASTSASQV PTAIAPSPPP PPPPPPPPPP PPPSSHLQET SASNYIATQL PLPSVLSQSQ STSSELPLVP PPLQPPREHP QSNIHKSHSH SNTPSASNHL VKLDSHPFKD KNVSATAFSS TIPSTTDDSH MEIDSDTPIS SIHAPTQSSS HLSSQIPLHS TTNPTTQPLT EEPPHLSLTT PVKRPTGARS KPTPNIFITS HSRLNNRPIY RPKPATGKRP LQEANIRVDN NLRILTARNP AILARSENAS SPSISASKKT RTENSSSEMS SERTTVEVSA SSSSEKSSSE SSLEKSHPPP PPPPPPPPPP PVSDNSTNNS NQSEHTSSTE NSQTQDQPAI ENHSQNNNSA VEHSHAVGMT ILNERSSENQ KSVEELPVNT IPSGRPSTTI DLQVRSAHVT SESFKSQHIS LAKSINVVAT AANVTSSTSS TAQKASETNG TGKELTLAGD TFIGDSQKEV TAKKNANTSA VILSLPSPIN SSTLHADGVE DKNGIHSAVI GRSAESTLRP TENLPMASSP SNNGTGIRAD IVQHSKTTSP LSALEVNNDN STITPDLCID KIRPGVTSHS EAPLADKLRH LVARMIEIEQ QLQGVRNVRN QQCADSREHI ISYNDYLQES ANAILQLKDL MTQLEQQSRI QTHQLVALQD EQLQEKGNLE MKIAASLLNS PEKESRVSYP DIFRKALEDQ EKNRSQRKRH EFDVQRQALV ERHRLQLKTL QERQQQEKDI LSEQVRRLVV EVDLRKLLSV GNVFSHVLDL PEFQQLKAHI KSMTPFAASP SLSTNYGSVS LESGMRSISY ANLAPSQKGN SLIAPNSNHG YLISLSPDIR RGHEQQQLLH SQIQQQILQL QPESRHARLL EEQLKQSMKR HDPSFGRSVV STRYEQPLHS SQAATVSQSQ TPTPTPSLQR YASMPTVQYS KSVFDRVADR TSSASESPAL KKQRITGLLG IELNQDAISS NVTVTDPVSP INGKIGHMTI NSPVSTRHLS IGSRNFTAIE SPREPGNRRV SDGSVPPQIH AGVARNVPEG FITEVFRQKN TESNKSTSAP TAANVDHKAG MEVISLLSDS EEE
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