| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_24555 |
|---|
| Symbol | |
|---|
| ID | 4850806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 109704 |
|---|
| End bp | 111488 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 595 aa |
|---|
| Translation table | |
|---|
| GC content | 42% |
|---|
| IMG OID | 640392514 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001387677 |
|---|
| Protein GI | 126273555 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5535] DNA repair protein RAD4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.159857 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.274534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATTCCTAAGG CAGAAAGAGA GGTTCGTAGA CAAATACATC AGGCTTACAT AGTTATGATG
ATTGTACATG GTGCTATGCG CAATAAATGG TGCAATGACT ACGAGTTATG GAACAGGTTG
AGGAACTCTG TAAACCCATT GGCGTTGGAA CTTATCCACC AGAACGTCAA CAACAAAGTG
CTAGATACGG TAAAGTCGCG TAGATTTTTA GATGGGCTAC AGAAGATCAT GAAGCAGTAC
CGTCACAGAT TCAGAGTAAC TTCTCAAGGT TTGATACGCA AGAACTGGAA CGAACTTGGA
ATACGACAGA ATCGAATTGA AAAAAATGTC ACCTTCGATC GATTTCGATA TTTATTGCTG
AACTTTCGAG GATCCAAAGA CATCGGGGCT CAAGGGTTTG TCTGTCTATT GCGTTCTTTG
GGGCTCAATG CTAGATTAGT ATTCTCGTTA CAGCCACCTG ACTACACCAT GACAGCCGCA
TTGCCCCCAA TAGACGTTGA TACTCTTACA GGAGGTGCTG GTTCATCTTC TGCAAACATT
CTGTCTATTT CTAAAGACGC TAAACAGAAT CTTCTTTCCA GCATACGCGC AAAATCCACA
GTTACTTCCG CAGAAAGAAC TATCAGGCCC GTCTTTGATG ACCCCAGCTA CCCCATCTTC
TGGGCAGAGG TTTGGAATAA GTATTCACGG AAGTGGGTAG CTATCGACCC GTTTGTACTT
GAGACTTTGG AGGTTCCCCC CATGATGAGA AAGTCGAAGT TCGAACCTAC ATTATCTGAA
ACACGCAATC AGCTTCTATA TGCTATTGCG TTCGACAAGT ACGGCTGTGT ACGAGATGTC
ACCCGTAGAT ATAGCCAATA CTATAATGCT AGAACAGTCA AGAAGAAAAT CCACTACCGT
TCAGACGAAG ACGAGCATTG GTACGAGAAA GTCATACGTG CATCTACATC TGCATTAAGA
AGAAAGTTGA ATAAACTAGA CATATTGGAG CTTAAGGAAT TCTACGATCG TGATTTGGCA
GAGGGAATGC CTAACAGTAA GGCTGATTTT AAAAACCACC CCATCTACGC GTTGGAAACC
CATTTGAAAC ACAATGAGAT TATCTACCCC AAGGACGATA CTAGCAAATG TGGAGTATTC
CGTGCCAAAT CCACTAGATC CAAGAAGAAT TCTGAAGAAG TAATACCCGT ATACAAAAGG
TCACATGTAT ATTTAGTAAG GTCTGCTAAA GCGTGGTATA TGCGAGGTAG AATTTTGAAG
ATGGGAGTCC AGGCACTTAA AGTGAAACAG CGTAGAGCCA CCACTCCTTC TAACGATGGA
TCAGATACCG AAGAAGCTGA TGGACGATTA TATGCCGAGT TTCAAACTCA GCTATACATA
CCACCACCGA TTATAGATGG TTTAATACCG AAGAATGCTT TTGGAAACAT AGATGTCTAC
ACATCTAGCA TGCTTCCAGA GAATGGGTAT TTACTAGATA CTTCTGGAAT CTATACTATG
AAGATGGCAG AACAAGCAGC TAGGATCTTA GAAATAGATT ATGCCAGGGC TATTGTTGCC
TTTGATTTTG GGGGTAAAAA GGAGAAAAGA AACAGCACAA GAATTCCAAC GGCCCGTGAG
GGAGGAATTG TTATTGATAG CCAGTACAAG GAGGCTATAT TTTTGGTTCT AGACACTCTT
GTAGAAGAAG AAGCAGAGCA GCAGAGGCAA AACGTGGAAT TAAACACCTT AAAGAACTGG
AAGTATTTCC TTATCAAACT TAGAATTATG GAGAGATTGA ACGCT
|
|---|
| Protein sequence | IPKAEREVRR QIHQAYIVMM IVHGAMRNKW CNDYELWNRL RNSVNPLALE LIHQNVNNKV
LDTVKSRRFL DGLQKIMKQY RHRFRVTSQG LIRKNWNELG IRQNRIEKNV TFDRFRYLLL
NFRGSKDIGA QGFVCLLRSL GLNARLVFSL QPPDYTMTAA LPPIDVDTLT GGAGSSSANI
LSISKDAKQN LLSSIRAKST VTSAERTIRP VFDDPSYPIF WAEVWNKYSR KWVAIDPFVL
ETLEVPPMMR KSKFEPTLSE TRNQLLYAIA FDKYGCVRDV TRRYSQYYNA RTVKKKIHYR
SDEDEHWYEK VIRASTSALR RKLNKLDILE LKEFYDRDLA EGMPNSKADF KNHPIYALET
HLKHNEIIYP KDDTSKCGVF RAKSTRSKKN SEEVIPVYKR SHVYLVRSAK AWYMRGRILK
MGVQALKVKQ RRATTPSNDG SDTEEADGRL YAEFQTQLYI PPPIIDGLIP KNAFGNIDVY
TSSMLPENGY LLDTSGIYTM KMAEQAARIL EIDYARAIVA FDFGGKKEKR NSTRIPTARE
GGIVIDSQYK EAIFLVLDTL VEEEAEQQRQ NVELNTLKNW KYFLIKLRIM ERLNA
|
|---|
| |