| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_18665 |
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| Symbol | SHMT |
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| ID | 7204241 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011671 |
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| Strand | + |
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| Start bp | 884561 |
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| End bp | 886280 |
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| Gene Length | 1720 bp |
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| Protein Length | 473 aa |
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| Translation table | |
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| GC content | 53% |
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| IMG OID | |
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| Product | serine hydroxymethyltransferase |
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| Protein accession | XP_002186147 |
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| Protein GI | 219113127 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TACAATCCCA TAACAGACTC TCACAGGAAG GCATCGGCAG TTAGAAGCAA CGCAGATTTC
AAAGATCCGA GTCGTCTACA GCATTCTCCA AAAAATCTTT ATCGCATCTC CTCTCTAAAA
CAACAGTCAT GACTTCTTTC AAAGATCAGG TAGGTGTATC GATCCTTTCC TTGAAACGAC
AATGCTGCTC GCGAGAATGG CGCCTTGCTG AGTTGGCGAC GCGTGTTCTT CTTCTTCGAG
CTGGAATGTC ATTTTCGAAT GCCAATATGC GTCCCCACGA CGGATTCTTA CGATTGTGGT
TTCTATTTCT GTTGATTAGG AATTCCGCGG CTTACTCAGT CTGGAAGAGC ACGACCCCGA
ACTCTTCGAT CTCATTGAAC AGGAGAAGTC TCGCCAATGG CGATCTTTGG AGCTGATCGC
CAGCGAGAAC TTTACATCCC GTGCGGTTAT GGATTGTCTC GGTTCAGCTC TCACGAACAA
GTATGCCGAG GGTCTCCCCG GCGCTCGTTA CTACGGAGGA AACGAAGTTG TCGATCAGGT
CGAAGCGCTT TGCCAAAAGC GTGCTCTGGA AGCCTACGGA CTCGATCCGG AGAAGTGGGG
CGTCAACGTC CAGCCCTACT CGGGATCCCC GGCCAATTTT GCCGTCTATA CGGCTCTGTT
GAAGCCTCAC GATCGTATTA TGGGACTGGA CCTTCCCAGC GGTGGACACT TGACGCACGG
ATTCTACACC TACTCCAAGA AGGAAGGTAC CCGTAAGGCC GTCTCGGCGA CCTCGGTTTA
TTTCGAATCA TTGCCCTACC GCGTTCACCC CGAGACAGGT TACATTGACT ACGATCAGCT
AGAGCGTGAT GCTGGTCTCT TCAAGCCGGC CATGATTATT GCCGGAGGTT CGGCTTACCC
ACGTGACTAC GACTACAAGA GATTCCGTGA AATTGCTGAC GCCAATGGGG CACTTCTAAT
GATGGATATG GCACACACAT CGGGCTTGGT CGCCACCGGC GAACTCGACA GCCCGTTCGA
ATACGCTGAT GTGGTCACTA CGACCACGCA CAAGTCGTTG CGTGGACCCC GCGCTGGTAT
GATCTTCTTC CGCAAGGACG AACGCGGCTT TGAGTCGCGG ATCAATCAGG CCGTCTTCCC
CGCGCTACAG GGCGGTCCCC ACGAGCATCA GATTGCCGGT GTTGCCACGC AACTGAAGGA
AGTGTGCTCT CCTGATTTTA AGGTCTACTC GCAGCAGGTG AAGAAGAACG CCAAGGCCCT
GGCCGACAAG CTTACATCGA TGGGATACTC TATGGCTTCG GGCGGTACCG AGAATCACTT
GGTGTTGTGG GATCTCAAAC CCCAAGGAAT TACCGGCAGC AAGTTTGAAA AGGTATGCGA
CGCTGTGTCT ATTACTCTGA ACAAAAATTG TGTGCCGGGA GATGTTTCTG CCGTCACCCC
AGGTGGGGTC CGTATCGGTA CCCCGGCTTT GACTACCCGT ACCATGGTGG AGTCCGACTT
TGAACAGATT GGGCAGTTCC TGCACGAGGC TTTGGAGATT ACCCTTGCGA TCCAGGAAAA
GAGCGGCCCG AAGCTGAAGG ACTTCCTGCC ATTGTTGGAG AAAAATGCGG ATATTGAGGC
CCTCAAGGTG AGGGTCCACG ACTTTGCCAC TACGTTCCCC ATGCCGGGTT TCGATCCCGC
GACGATGAAG TACAAGAACC CTGCTGGCCC ATCCCACTAA
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| Protein sequence | MTSFKDQEFR GLLSLEEHDP ELFDLIEQEK SRQWRSLELI ASENFTSRAV MDCLGSALTN
KYAEGLPGAR YYGGNEVVDQ VEALCQKRAL EAYGLDPEKW GVNVQPYSGS PANFAVYTAL
LKPHDRIMGL DLPSGGHLTH GFYTYSKKEG TRKAVSATSV YFESLPYRVH PETGYIDYDQ
LERDAGLFKP AMIIAGGSAY PRDYDYKRFR EIADANGALL MMDMAHTSGL VATGELDSPF
EYADVVTTTT HKSLRGPRAG MIFFRKDERG FESRINQAVF PALQGGPHEH QIAGVATQLK
EVCSPDFKVY SQQVKKNAKA LADKLTSMGY SMASGGTENH LVLWDLKPQG ITGSKFEKVC
DAVSITLNKN CVPGDVSAVT PGGVRIGTPA LTTRTMVESD FEQIGQFLHE ALEITLAIQE
KSGPKLKDFL PLLEKNADIE ALKVRVHDFA TTFPMPGFDP ATMKYKNPAG PSH
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