| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_18579 |
|---|
| Symbol | |
|---|
| ID | 7204395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011671 |
|---|
| Strand | - |
|---|
| Start bp | 617949 |
|---|
| End bp | 619672 |
|---|
| Gene Length | 1724 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002186383 |
|---|
| Protein GI | 219113599 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.445158 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CCAGAGGAGC AACGTCGAAA CTGTTACATT GTATTTGGAG TTGCCGAAAA TAGTGGTGCG
AAGAAACGCT GAAATATGGC GGACGCAAAA TCTCTTTTTA CTCTGTTGGA AAGTGCAGCA
GGATATGCTT TGTTCGAGGT AGTCGCATTT GAAGAGATTG GCGGCTTGTT GGAAGACTCT
ATGGACACCG TCACCGATTT GCAACGCTTT AGCCGCGCAG TGAAACTTAA GGCGTTCAGT
CCATTTGAAA GCGCCGCCGA AGCCTTGGAG AACGCAAATG CTGTTTCGGA ACACGCCATG
ACAGGAACAC TTCACAATTT TTTAGAGATG AACCTCCCTA AGGTCAAAAA ATCCAGCAAG
ACGGCTTCAT ACGCACTTGG AGTCATGGAT CCGGCCTTGG CCACGGCTAT TTCTGAGGGT
CTTGGTGTTT CATGCCGTTC TGATGATACG ATTCGAGAAA TTGCCAGAGG CTGTCGAGCG
CATTTGGATA CTTTTGTCAA AGGTCTCGAA GGCGGCGCAG CTGAAAAAGC CCAGTTGGGG
CTTGGCCATT CCTATTCGCG TAGCAAGATC AAGTTTAATC CAGCTCGTTC CGATAATATG
ATCATTCAGT CGATCGCTTT GTTGGATCAG CTGGATAAGG ATGTCAACAC CTTTGCGATG
CGCATTCGTG AATGGTATTC CTGGCATTTT CCAGAGCTGA AAGACATTGT GAAGGATAAC
ATTATGTTTG CCAGAGCAGC AGCGTTCATT CAAGACAAGA ACTCCCTTTT TACAAACAGC
GCTTCTGATT CCGGAGAAAG TTCCGCAGAA AGCAATGGAA AGCTGGAAGG TCTAATAGAA
ATTGTTGGGG ATGAGGACCT TGCCAAACAG GTCATCGCTT CCGCGCGTAC GAGTATGGGA
ATGGACTGTA GTCCGGTCGA TATGATCAAC ATTGTTAACT TTACGACTCG CATGGTAAAG
TTAGCGGAAT TCCGGAAACA ATTGGGCATG TACCTAACGG AAAAGATGTC CATTGTCGCG
CCGAATTTGT CGGCACTAAT TGGAGACACT GTTGCAGCTA GACTTATCAG CAAGGTTTGT
CCATTCTGAA TTATATTTTT GGTCTCTTTT TTACCGATCA TGTGCTCAAT TGTTTGATTT
CTACCACACA GGCTGGTTCG CTGACAAACC TCGCCAAGGC TCCTGCGAGT ACAGTGCAGA
TTCTCGGAGC TGAGAAGGCT CTCTTCCGGG CCCTCAAAAC CAAGGGTAAT ACACCCAAGT
ACGGCTTAAT TTATCATTCT ACTTTCATAG GACGCGCCGA CGCAAAAAAC AAGGGCCGCA
TATCTCGCTA TTTGGCTAAT AAATGTTCGA TCGCTACACG GATCGATTCT TTCTCGGACG
AGCCTAGTCG CTTATATGGA GAAAAGCTTC GAGACCAAGT CGAGGAGCGG CTGAAGTTCT
ACGAGACGGG CCAAGCACCA AGACGCAATT TGGATGTTAT GGAGGAAGTG AGCCGGGAGC
TCAGAGCCGC CAAGGGAGAA GAAGACGACA ATGTTGAGAT GGAGGATATC TCGAAGAAGG
ACAAGAAGAA AAAAGCGAAG AAAGAAAAGA AAAGCCGGAA GTCCAGTGAT GCTATTGAAG
TTGATGAAGA ACTCAAACGG TCAGCGAAAA AGGCGAAAAA GGAAGCAGCT TCATCGGAAA
AGAAGAAAAA GAAAAAGAAA TCTAAAAGCG GAGATTCTGA TTAG
|
|---|
| Protein sequence | MADAKSLFTL LESAAGYALF EVVAFEEIGG LLEDSMDTVT DLQRFSRAVK LKAFSPFESA
AEALENANAV SEHAMTGTLH NFLEMNLPKV KKSSKTASYA LGVMDPALAT AISEGLGVSC
RSDDTIREIA RGCRAHLDTF VKGLEGGAAE KAQLGLGHSY SRSKIKFNPA RSDNMIIQSI
ALLDQLDKDV NTFAMRIREW YSWHFPELKD IVKDNIMFAR AAAFIQDKNS LFTNSASDSG
EKIVGDEDLA KQVIASARTS MGMDCSPVDM INIVNFTTRM VKLAEFRKQL GMYLTEKMSI
VAPNLSALIG DTVAARLISK AGSLTNLAKA PASTVQILGA EKALFRALKT KGNTPKYGLI
YHSTFIGRAD AKNKGRISRY LANKCSIATR IDSFSDEPSR LYGEKLRDQV EERLKFYETG
QAPRRNLDVM EEVSRELRAA KGEEDDNVEM EDISKKDKKK KAKKEKKSRK SSDAIEVDEE
LKRSAKKAKK EAASSEKKKK KKKSKSGDSD
|
|---|
| |