Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_54677 |
Symbol | |
ID | 7202225 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011680 |
Strand | + |
Start bp | 102387 |
End bp | 106058 |
Gene Length | 3672 bp |
Protein Length | 1087 aa |
Translation table | |
GC content | 48% |
IMG OID | |
Product | DNA polymerase delta |
Protein accession | XP_002181135 |
Protein GI | 219121567 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGACG ACGATCAGCT TTTTGACGAT GACGACAACA ACGTTGGGAT TGAAGAAGAA ATTCCGGCAG AGATTCTGGC GCAACAAGCA CAGGTTGTTA GTACAGTTGC GGCGAAGGAC CAGCAGCGTT GGAAACGAGC CCGTCTACCG GACGACCTGA GCAACCAAAC GGATCTGAAC CTACAGTGGC TCGACATGGA TGTTGTTTCG GGTAAACCCT TACCAGCTAA TCCCAACCGC ACCAAGCCTT TAGTGGGACG TCGAGAAGGA CAAGTTCCGA TCTTGCGCGG ATTTGGTGTG GACGAACGGG GACACTCTAT TGCTGTTTTT GTTCACGGCT TTACCCCTTG TACGTTACCG AATTCCGAAA GGACAGACGG CGTGTCCATC CGGCGCACAA GGCATCCAAG TACTCTCACT CACAATCACT TCTATTATTG CTGGCAGACG CCTACTTTGC TTTGGAAAAT GGCTACGAAC TGACGAATCT GGCCGAGCTG AGTGCGATAC GGCAAACTCT TACGGCGCGA CTAGCTGCTG CCGCCCGCGG CGGTACGGCA ACACACGCCG AAGTCCTCGG CATTGAATAC ATTACCGATC ACAAGTCGAT TATGGGTTAC GAAACGCCGC ACACCAAATT TTTGAAAATC TACGTGTCCT TGCCCGGCCT GGTGCCGACG CTGAAACGCA TCATGGAAGA CGGAATCGAT CTGCCGGGCA TCACGCGCAC CGGTGGAACG AGTACGGGTC TACCACCCAC ATATGCGGCC TTTGAAGCGA ATGTTCCGTT CGTCCTGCGT TTCATGGTGG ATCGAAAACT TTCGGGGGCT GGCTGGCTGA CCTTGCCGTC GGACACCTAC CAGATTCGGG AGATTCCACG GAAGGAAACC CATTGTCAGG TACGTACTCC GTAGCTGCGT TACTACTCGA TCGGCGTATG CGTCGTTCTC ACAGGTTCTT TGTTTCCTAC AGATCGAAGT CGACATTTCG TACGACGATA TTACTCCACG ACCATCGGAA GGCGAATGGA ACAAGATTGC CCCGTTGCGA ATTCTTTCGG TCGATATAGA ATGTCAAGGC CGAAAGGGCC ACTTTCCGGA AGCAGAAAAA GATCCTGTCA TCCAGATTGC CAACACGATC TCGCTGTACG GTCAAGATAA ACCCATTGTG CAGAACGTCT TTACACTCAA AGGCTGCTTG CCCATTGTTG GGGCTCAGGT TATTTGTTCC GACGAAGAGG AAGACATGCT CATGAAGTGG CGAGCATTTC TCGAGGCTGC TGATCCTGAC ATTATCACGG GTTACAACGT TCAAAATTTC GACATTCCCT ATCTCTTGGA CCGTGCGGAC TCTTTATCGA AAGGTAGCAG TCATAGAAAG GCGGTGCTTT CCGGTTTCGC CCAGTGGGGA CGTGTGCGCA ACACGAAGGC CAAAATGCGC GACACCATGT TTCAATCGTC CGCCTACGGC AAACGCGCCA ACGTGGAAAC TACCATTGAC GGACGAGTTA TCTTTGACAT GCTTCCTTAC ATGCAGCGTA ACCATAAGCT GAGCTCGTAC TCATTGAATT CGGTATGCGC AGAATATCTT GGCCAACAGA AGGAAGACGT TCATCACTCC ATTATTTCTG ACCTTCAAAA CGGCAGCGAC GAAGATCGCC ATCGGCTGGC TGTTTACTGT TTGAAGGATG CTTTGCTACC ACAACGACTC ATGGACAAGT TGAGTGTCTT GGTAAACTAT ATCGAGATGG CTCGAGTAAC GGGGGTTCCC ATGTCGTTTT TGATCTCACG AGGCCAGCAA ATCAAGGTCT TTTCGATGAT TCTACGCAAA TGCCGACACG AGAAACTTCT CGTTCCTACC CTGAGGAAGA GCGGCAACGC CAATGCAGAT GTTGGGTACG AAGGAGCTAC TGTCCTGGAT CCCATCAAGA ACTACTACGA AGTACCGATA GCCACATTGG ACTTTGCATC CCTGTATCCA TCAATCATGC AAGCATACAA CCTCTGTTAT TCGACTTTGG TCAATCCTGC CGATGTAGGC AAGCTCGACC CAGACATCTA CAGGAAAAGC GAAAACGGTA ACGTATTTGT TCATTCTAGT GTCAAGAAGG GTATTCTACC AACAATTCTC GAGGAATTGC TGAGCGCTCG TAAGCGAGCT AAAAAAGACA TGAAGAATGC TCCCACAGAT TTCGATCGAG CGGTACAAAA TGGTCGCCAG CTAGCGTTAA AGGTGTCTGC CAACTCTGTA TACGGTTTCA CGGGTGCTAC TGTCGGACAA CTCCCGTGTC TCCCAATTGC ATCATCGGTT ACATCGTATG GACGCCAACT GTTGGAAAAG ACCAAAACCT TTGTTGAGGA GAAATACACG AAGTCAAATG GCTATGACCA CGACGCCCAG GTCGTATACG GGGACACAGA TAGCGTAATG GTAAAGTTTG GTCCAGCAAC GGTCGCGGAA ACGTTTCCAT TGGCGATCGA AGCTGCTGAA AAAGCTTCCG AGATTTTTCC GAGTCCAATT CTTTGTACGC TTTATCTGTG CTACAGCTTA ACTTGGATTC AACTTTCTCT CACACATGCT TTGCTTTCTG GACTAACAGT GGAGTTTGAA AAGGTTTATT TTCCTTACCT CCTCATGAAC AAAAAACGCT ACGCTGGTCT GATGTGGACA GAAATTGAGA AGTACGACAA GTTGGACACA AAGGGATTGG AAGTGGTGCG TCGAGACAAC TGTCAGCTGG TCCGTGAAGT TATTCAGACG TCATTAAACA AGATATTGAT CGATCAAAAT GTTCAAGGGG CTATCGAGTA CGTCAAGTCT CAGATCTCCG ATTTACTACA AAACAAGATG GACATTTCAC GTCTGGTCAT TACAAAATCT CTCAATAAAG GGGCTGAATA TGCTCTTGGT CTCGGTGGGA AGAAAGACGA TTACAAAGTC AAGCAGGCTC ATGTAGAGCT TGCCGCGCGA ATGAAAAAAC GGGATGCCGG ATCAGCGCCA CAACTTGGTG ATCGTGTTCC ATACATAATT ATCACGGGTG CCAAAGGAGC TGCGAATTTC GAAAAGGCTG AAGATCCTAT CTACGTACTG GAAAACAATC TACCAATAGA TTGCAAGTGG TACTTGACAA ACCAGCTGTC GAAGCCGTTG ACTCGTATCT TCGAACCTAT CATTTCAGAT GTTGATAAAT CCTTACTCCA GGGAGATCAC ACTCGCAAGA TCTTTATTCC AACTCCAAGC GCCAGGAAAG GTAGCTTAAT GATGTTCGCC AAGAAGGTAG CACAATGTAT TGGCTGCAAG GCAAGCGTGG ATGGTAAGAA AGGCTACTTG TGCAAACACT GCGTAAATCG AGAAGATGCA ATCTATTTGG AGAAGTTAGA AATTTTGCGT GAAGCCGAAC TTCGCTACAA TGATTTGTGG GCAGCTGCGC AGCGTATCCA TGGTACTGTG CATTCGGACA TTATTTGTAC GGGAGACGGT TGCAGTTGTC AGTTTTACCG TCGAAAGAAA GTTCAAGCTG ATATACGCCT TGCTCAAGAC GTCCTTGACA AGTTTGCTTC TTGAGCACTT TGATCGATAG CGCTAGTAAC TAAAGCCGAC ACCATGACGA ATTGGCACTC GGTATCCAAG ATCGTATTTA AGAAATCATA ACAGTATTTT TTACGCGCCA TG
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Protein sequence | MIDDDQLFDD DDNNVGIEEE IPAEILAQQA QVVSTVAAKD QQRWKRARLP DDLSNQTDLN LQWLDMDVVS EGQVPILRGF GVDERGHSIA VFVHGFTPYA YFALENGYEL TNLAELSAIR QTLTARLAAA ARGGTATHAE VLGIEYITDH KSIMGYETPH TKFLKIYVSL PGLVPTLKRI MEDGIDLPGI TRTGGTSTGL PPTYAAFEAN VPFVLRFMVD RKLSGAGWLT LPSDTYQIRE IPRKETHCQI EVDISYDDIT PRPSEGEWNK IAPLRILSVD IECQGRKGHF PEAEKDPVIQ IANTISLYGQ DKPIVQNVFT LKGCLPIVGA QVICSDEEED MLMKWRAFLE AADPDIITGY NVQNFDIPYL LDRADSLSKG SSHRKAVLSG FAQWGRVRNT KAKMRDTMFQ SSAYGKRANV ETTIDGRVIF DMLPYMQRNH KLSSYSLNSV CAEYLGQQKE DVHHSIISDL QNGSDEDRHR LAVYCLKDAL LPQRLMDKLS VLVNYIEMAR VTGVPMSFLI SRGQQIKVFS MILRKCRHEK LLVPTLRKSG NANADVGYEG ATVLDPIKNY YEVPIATLDF ASLYPSIMQA YNLCYSTLVN PADVGKLDPD IYRKSENGNV FVHSSVKKGI LPTILEELLS ARKRAKKDMK NAPTDFDRAV QNGRQLALKV SANSVYGFTG ATVGQLPCLP IASSVTSYGR QLLEKTKTFV EEKYTKSNGY DHDAQVVYGD TDSVMVKFGP ATVAETFPLA IEAAEKASEI FPSPILLEFE KVYFPYLLMN KKRYAGLMWT EIEKYDKLDT KGLEVVRRDN CQLVREVIQT SLNKILIDQN VQGAIEYVKS QISDLLQNKM DISRLVITKS LNKGAEYALG LGGKKDDYKV KQAHVELAAR MKKRDAGSAP QLGDRVPYII ITGAKGAANF EKAEDPIYVL ENNLPIDCKW YLTNQLSKPL TRIFEPIISD VDKSLLQGDH TRKIFIPTPS ARKGSLMMFA KKVAQCIGCK ASVDGKKGYL CKHCVNREDA IYLEKLEILR EAELRYNDLW AAAQRIHGTV HSDIICTGDG CSCQFYRRKK VQADIRLAQD VLDKFAS
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