Gene PHATRDRAFT_54330 details

Gene Information

• Locus tag: PHATRDRAFT_54330
• Symbol: Dph1
• ID: 7199631
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011673
• Strand: -
• Start bp: 774434
• End bp: 777962
• Gene Length: 3529 bp
• Protein Length: 1010 aa
• GC content: 45%
• Product: diatom PHytochrome 1
• Protein accession: XP_002179062
• Protein GI: 219116534

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.784777
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTCGCCTTAC AGTACAAGTT TGGTATTTCC CAAAGTATTC AAGGAACCAC GCCATGAGCG 
GGGCAAATTA TAGAGAAGCC GACTTCCCTG GTGTCCGTGC CGCGGGTCGG CACAACAATT 
CCATTACAAC CAAAGAGCTG ACGGAATGTG ATCGTGAGCC TGTGCACTTG ATCGCAAACG 
TACAAGGGGG TACCGGCCAT TTGTTGTTCA TTCACTACCC GTCTGGAAAA ATCTTGGCTC 
ATGATCGCGA CATCGAACAC ATTCCTTGGA TCCGGTGTCA CGAAAACAGA ACAGTTACTG 
CTGGCCGCAC TGGGGCGAGA ACTACATCTT CTTTCCATGG AGAACAGCAG AGTGGTGAGA 
GTCCTCACGA AGCTATTGGC ATATCTGGAG GCTTTTTACT GAACTGGGTT CCGCACGATT 
TCTACGAGAA GATTCTCGAT TTGGTCCTCG GTATTATCCA TTCCGATACG CACAGAAATT 
TTTATTTTTA TTCATATGAT GGTTCAGCGT ACGCTATTTC TATTTCAGCG ACGGAAATGG 
ACTACTCCGT GATTGGCATC GAAATTGAAA CAGTTGGTTT GGATGATGTG AGTTTTCCTG 
CAAATACAAG GGCAGCCTGA CGCACTTGCT TGCTAAACGC TCTCTTTTCG TCTTACTTTT 
TCCCTTTTTG TAGACTGCCT CCCATTTTTC ATCCTCATTG TTGCATTTGG GACGTATTGT 
GGAATTCTAC CAGCACGAAG CAATTGCCAA GACAGCCTGC GACACTGTTT TTCACCTGTT 
GGGAAAGTAT GACAGGGGCA TGGTGTACCG ATTCCACGAT GATCTGTCCG GCGAGGTCGT 
GCACGAGATT AAAGCAAATC ATGTGGAATC CAGCTATCTT GGCATGCGAT TTCCTTCCTC 
TGATATTCCT TTGCCATCGC GACAGCTTTA TATAAAAAAT GGTGTGCGGT ACATTTACGA 
CGTTGATACC GAGGATCTAC CGATTTTATC CCTGGACAAT GAAAAGATGG ATCTCAGTCA 
AATTCGCATG CGTGCTGTAG CCAAACCGCA TATTGTGTAC TTAAGAAATA TGGGGGTGGT 
GTCGTCGTTG AGCTTGGCGA TTGTTGTCGA CAATGATCTG TGGGGGTTGC TGGCTTTTCA 
TGGGTACGGC GCGAGGTACA AGCCTTCGCT CCATCAGCGA ATTGCTTGTG AAACCATAAG 
TGCGATGGTC TCAGTTCGTA TTGAATCTCT CATGAAAAAG GCGCAGAGTG CCCGAATTAT 
TAAGTTGGGC CAGTGCACTA TGAGCTTAAA GCATGACCAG AGCCTGATTC ACAATCTCTA 
TGAATGGGGT GAAGGCATAC TCGAAATTGT TGATGGAGAT GTGTTGGTTG CACATGTACA 
AGATCCTAGA GATGGCGAAG GCGACAGAAT TGTGCTGGGT GATCCTTTGT TGGTACCGAA 
GGATTCTTTT TGGACTAAGA TGAGTTCCTA TCAGAATCGC GAACTCTGTG TCATTTCAAC 
ACGCAAAGCT CTCACAGATA TCAAATTGAC ACAAGAAGAG TGCCCAGCAA GTGGAATTGT 
ATTTTTCCAA GAGGGTCGTA CTCAGATCAT GATTGGACGA GCAATGCGAT CCAAAGATGT 
CGTATGGGCG GGTAATCCTG ACGAACCAAA ACTAAGGATT GGAGGAATTT TGAATCCGCG 
CAACTCCTTT ACTCAATTCA TTGAAAAAGC GCGAAAGGAA TCACGAGCCT GGACTGTGCA 
AGATATTAGT GTGATTTCTG TGCTTCGTGA CCGTATATGT GAGCATTCGT ACGCATACAT 
GATGGGATTA CTGAGAGGTG ATATTCAAGA TGCAAACCGG AAATATTTGG CGGCAATTGA 
CCGAGCGCGG GACAATTACG AATTCTTTGC GCATATGAGG TAAGGCAGAA GCTTATCGAC 
GTTAGAAGAG TTTAATCCTT TCCCCTCTTA CTTTTTGCTT TTGAAACAGC CACGAACTAC 
GGACTCCTTT CCATGGCGTT ATGGGATGCT TAAGTATTCT GCATGAGTCA ATTGAAGATA 
TGCCAGCAGC GGAAGTCAGA GATGTTGTCG ATACAGCAAT AGCTTCCGGA AACCACATGA 
TCAATCTTCT CAACGATATT CTGGACATCT CGAAGAACAA ACACTTGTCT CATATATCGG 
CGCAGGATAA GGTTATTTAC CAGACGTTAG CCTTCGAGAC AATTGACTGT ATGAAGTCAC 
TGGCCACTTC TCGAAAGATC GAGATGAGAT CGTCAATCGA GCCGAAAGGC TTGGAAAAAG 
TGGTGATTGT GACGGATCGT ACAAAAATTA TTCAAATCGT TTCCAACGTT GTGAACAATG 
CCATCAAGTT TACGGGTGAA GGGACTGTCG ATGTTGTATT TAGGCTCGTT GATTCGCTGC 
AAGAGGCAAC TATGATGTGG GAGCGAGGCG CGGAAGTTCA TGCTGGATCA GTGTTTTCGA 
TGAAGGAGAG TGAAATGCAC ACATCGGCTG AAGAAGTAAG ACGGAGCACT ATGACGTTTA 
ATGAGACGCA TGATCAAAAG TGGATGACAA TGAGTGTTTC AGACACCGGA TGCGGTATGG 
AGCCGTGTGA ACTAGTAGAA ATGTTCTCAC CATATACCCA ATCGAGTCAT GGATCCAATC 
GCATTTTTCA GGGAACAGGG CTTGGGCTTT TCATTTGCGT TTCATTATGT TACCAGCTCA 
ATGGTTTTAT TTCTTGTGCA AGCACCCCCG ATAAAGGAAC ACTTTTTCAT ATGGGAATCC 
CAGTCGGATT GTTAGCTGAA GACACAGTTG AGGGAAATCA GACACTAACA GATGATACGA 
AGGAAACAGA GAGCGTGATC CAAATGTCGG GTCCGATTTT GATCGTAGAT GACAATGTTG 
TGAACGTCAA AATTCTAAAC CGGGCGCTAC TTTTGGATAT TAGAAGAGCT GGTCTTGCAA 
TAGAGGTCCT CACAGCAGGG GGTGGGGCTG AAGGTGTCCA GGTCTTTCGA GACAAGCGCC 
CCAGTCTATG CATTATCGAC TATCACATGC CCGATGTCGA TGGCATTGAA GCGACCTGCA 
CCATACGGAA ATACGAGCAA GAAAACAAAA TTGATCCTAC CTACATTTTG ATGTACACTG 
CTGATGCCAC AGAGCAAGCT AGAGCATTAA TCTTGAGCTC CGGCGTTAAC GATATCATGT 
CCAAGCCTCC GCCGAAGGGA TTCATTGCCG GATTGGTGCA GAGGCTGCGG GTTCCGGAAT 
AGCATGGTCG TTCATTCATA GAAGAATCGA CTTCTCTTCC AGATTTCGAA TGCTTGTAGC 
TTTCGTTTAT TCTTCGGCCG CGCAGCTGCT GCTATCAATT CACAATGTTA AAATATATAC 
CTTCGCTTCC ACTACATGGT AATTACAAGC GTGGCTGGAG ATAGCTCGTG TGTATTTCTC 
AAACACACGG CCAGAAAGTC TTTGCATCTC GGCACTAGAC TTTTCTATGG AAGAGACATC 
CGAAAGAATC GCCAAATACG TGATAAAATA AAATTGAATG CCCACGACA 

 

Protein sequence

MSGANYREAD FPGVRAAGRH NNSITTKELT ECDREPVHLI ANVQGGTGHL LFIHYPSGKI 
LAHDRDIEHI PWIRCHENRT VTAGRTGART TSSFHGEQQS GESPHEAIGI SGGFLLNWVP 
HDFYEKILDL VLGIIHSDTH RNFYFYSYDG SAYAISISAT EMDYSVIGIE IETVGLDDTA 
SHFSSSLLHL GRIVEFYQHE AIAKTACDTV FHLLGKYDRG MVYRFHDDLS GEVVHEIKAN 
HVESSYLGMR FPSSDIPLPS RQLYIKNGVR YIYDVDTEDL PILSLDNEKM DLSQIRMRAV 
AKPHIVYLRN MGVVSSLSLA IVVDNDLWGL LAFHGYGARY KPSLHQRIAC ETISAMVSVR 
IESLMKKAQS ARIIKLGQCT MSLKHDQSLI HNLYEWGEGI LEIVDGDVLV AHVQDPRDGE 
GDRIVLGDPL LVPKDSFWTK MSSYQNRELC VISTRKALTD IKLTQEECPA SGIVFFQEGR 
TQIMIGRAMR SKDVVWAGNP DEPKLRIGGI LNPRNSFTQF IEKARKESRA WTVQDISVIS 
VLRDRICEHS YAYMMGLLRG DIQDANRKYL AAIDRARDNY EFFAHMSHEL RTPFHGVMGC 
LSILHESIED MPAAEVRDVV DTAIASGNHM INLLNDILDI SKNKHLSHIS AQDKVIYQTL 
AFETIDCMKS LATSRKIEMR SSIEPKGLEK VVIVTDRTKI IQIVSNVVNN AIKFTGEGTV 
DVVFRLVDSL QEATMMWERG AEVHAGSVFS MKESEMHTSA EEVRRSTMTF NETHDQKWMT 
MSVSDTGCGM EPCELVEMFS PYTQSSHGSN RIFQGTGLGL FICVSLCYQL NGFISCASTP 
DKGTLFHMGI PVGLLAEDTV EGNQTLTDDT KETESVIQMS GPILIVDDNV VNVKILNRAL 
LLDIRRAGLA IEVLTAGGGA EGVQVFRDKR PSLCIIDYHM PDVDGIEATC TIRKYEQENK 
IDPTYILMYT ADATEQARAL ILSSGVNDIM SKPPPKGFIA GLVQRLRVPE