Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_53964 |
Symbol | |
ID | 7196010 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011669 |
Strand | - |
Start bp | 729829 |
End bp | 733330 |
Gene Length | 3502 bp |
Protein Length | 1006 aa |
Translation table | |
GC content | 48% |
IMG OID | |
Product | probable calcium ATPase |
Protein accession | XP_002177149 |
Protein GI | 219110795 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.379869 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | CAAACCTTGA AATCGATTGT CATCTCTTTC TGGCCTACAC ACCACACAAG AGTAACCACA GAACTTCTTA AGAAAAGGCC GTTGTTTTGT TAGATAGTAG AAATCCGGCT TCTTCGTTAT TCCTCGGTAT GGCAAGACCG TACCCCTATA CACGGTTGGA AGAATGCGCT TGGCAGCCGG AAGATGTGGC TCGGCATTTG GCGGCCCTTG CAAATGGGAA CTTCTCCGTC GATTCTTCGA GCACGCAGCT CCTTAGCCAC GGATGGTCGA CGCGCCAGAT TTCAACGTTA CGACTTGAAT TTGGGGCGAA TCGAATGCCA GGTGACGATG GCGACAAACA CAAGACGTTT ATGTCGCAAT ACACAGCGTG CGTCTCGCCC ATTTTCACGG CGCTCGTCTC TCAGTTGAAA GAGCCATTGA TTCTTATGCT ATTGGGTTCT GCCGCCGTTT CTATTGCTCT CGGAAACCAG TCGGAAGCAA TCAGCATCGC CTTTGCACTC CTTATCGTGT CCATGGTTGC AGCGGTTCAA GAATACCGAT CGGAGGCTGC TTTGGAAAAG TTGGCGACTC TCGTGCCACA CACATGTACA GTGCTACGGG ACGGCCAAGT TATCGATGGT TTCTTTGCGA AGGAACTTGT TGTTGGTGAT CTAGTACTAC TAGCAACTGG AGAGTAAGTT ACAGTTCTCG TTCTTTTTGG TTTTTGAAAC AACATGCATT CCAGCTTACT TCTGTTCCTT CAAGTCGCGT TCCCGCAGAC TGTCGTGTCG TCGACTCAGT AGAACTCATA TTAGACGAAT CCTCATTGAC GGGAGAGAAT CATCCCGTTG CCAAAACAGG TGAAGGCGTG GTGCTGGGAG CATCGCCGCC TTTGACACAG CAAAAGAATG TAGTCTTTGC AGGCAGTCTA GTTAATGCCG GACGTGGACG GGCTCTTGTG ATTGCAGTGG GAGTCTCGAC TGAGTTTGGG AAGGTGGCTA CTGAATTGAG TTCAGTTGCG AGTCGAAAGT CTCCGCTTCA AATTAAAATA GATGAACTGG GCCAGCGATT GGCTGGATTG AGTTCGATTG CAATCTCAAT CATCGCAATG CTGGGTTGGA TTCTAGGCCG ACCTTTCCTG GAAACCCTCA CAGTAGCTGT GGTAAGTTCT GGTAAGCGAG TTCTGAAGTT TTTGTCACGT TTGCCTGATA TTATGTTGCT TTTTGACTGT GTTCACAGAG TCTTGCCGTA GCCGCCATCC CGGAAGGCCT TCCTATCTGT GTGACAGTAA CTCTTGCACT TGGAGTGTTA CGTATGGCCA GAAGGAATGC AATCATTAAA AAACTCCCAG TAGTTGAGTC ACTTGGATGC GCAACTGCCG TAGCCTCGGA CAAAACTGGG ACGTTGACAC AAAATGAGAT GACTGTTCGG ACCTTATTCG CACTTGCTTA TCCTAAAGCC AAATTCGGAT TTACAGGTAT AGGGTACGGG TCCAAGTCGG GTAATTTGGT GTATCTGGAT GCTGACGGAT CGACTGGCCC AAAAGCTCCG TCCGGGAAAG TAACTTCAGA ATGCGACGAA TATGCTGCCC TGTCAGCTTT ACTCAATACG GCGTGCCTGT GCAACAATGC AACTCTTTTA CAATCGTTGG ACTCAGAGTT GTCGGAAGGT CATACTGGAG GTGCGCTGTC AGGTCAACCG ACAGAGCTTG CACTTCTAGT TGCAGCTGAC AAAGCAAATC TTGAGGATCC AAGAGCCCAG TATCACCGTT TACAGGAGAT ACCTTTCACG AGCGATCGTA AACGGATGGA AGTTCGTGCC CGTCCGGTTA GTGGACGACA ATGTTGCGAT GCATTTGCTG TCGCGTCGAA CTCCGTTACT TATTCAAGAA ATCGACATGG AGTGGGAGAT GGTAGCCTTT ACTTTGTCAA GGGCATGCCT GAAAAGATTT TAGGAGAGTG TTCGACATAT GGTCAATCAA ATGGGTCAGC AGAGCTTCTC GTAGAGGATG ACAGGGCCGA AGTGCTTCTT CAGGCTCGCC GGATGGCTGC TGGAGGGCTT CGCGTTTTGG CCTTTGCATA CGGGCAATCT TTAGGAGAGT TAGTATTCGC AGGGCTCGTT GGGATGGAGG ATCCACCAAG AGAAGGGGTG TGCGATGCTG TGCGCCAGCT ACGTCGTGGC GGGGTGAAAG TAATGATGGT GACAGGGGAT TCTAAAGAAA CGGCATTGGC AATCGCTCAG CGGTGTGGTA TTTTAGGCAG CGAAAATGGC GATACAGCTG TTGACGATAC GCTTTTGTCC TCTGAGACAA TTTTTACAGA TGATCTCGAG TTGGGTACCA GTGAGGCGTT GAGTGGAGCC GAACTCGATG CTATATCACC GCAAAACCTC GCGGAAAGTA TTTCTGGAGT CCGTGTTTTC TATCGGGTGG CTCCTCGTCA TAAGCTAGCA ATTGTCAGAG CACTTCAAGA GCGTGGTGAT ATAGTCGCAA TGACGGGAGA TGGAGTGAAT GACGCCACTG CGCTGAAAGG TGCTGATATC GGGATTGCTA TGGGATTGAA AGGTACCGAT GTTGCAAAAG AGGTATGCAG ACGTTTTCTG GGTGGTTTAT ATGAGAGGAG AGCGTTTTTG TCTCACCTGC GATTGACTCG TACAGGCCGC AGATGTAGTG TTGGCGGATG ATGATTTTAG GACGATTACA ATGGCAATTG CAGAAGGAAA AGGAATTTTT TTCAATATTC GATGTTTCTT GGCATTTCAG CTGAGCACGT CATTTGCTGC TCTAACGATG GCCAGTATTG CAACTGCATT TGGGTTACCA TCTCCTCTCA ACGCAACTCA AATCCTTTGG ATAAACATCT TGATGGACGG CCCTCCAGCT CAAAGTCTTG GGGTGGAACC CGTTGATGAA AAAATTCTTC GCGCGAAACC GAGAAAAGCG GATGAGCCTA TTGTTACACG GGCTCTTTTA TTGCGGGCTA CTAGCAGTGC TGCATTAATT GTATTTTTGA CGCTGAAAGT GTTTTCCAAT GAGCTTGATG ACGGAGCCGT AAACCGCCGA GATACGACCA TGACTTTCAT GATGTTTTGC AATTGCGACT TGTTCAACGC GTATGTTTGC CGATCTGCTG ACAAGCCTTT CTACAAAATT AACCTGTACA GCAATCCAGC GTTTCTCTGG GCTATAGGAG GTTCAGTTGT GGGACAGTTT CTTGTGGTGT ACTGGCTTCC GCTTCAGAAA GTTTTTCAAA CTGAAGCATT GACATTCTAC GATATCGCCT ACATTGTGTT GCTCAGTTCA ATGGTCTTGT GGCTCGATGC ACTGAGAAAG ACATTCTTCC CTAGTGTCTT TTGCGATGGA TACCACACTT CCCCTTTTGC GTCCAAGAAG ACAAGCCGTA GTGCTGGTCT AAGGCAACAC CACTCTTGGC TTAATTTTCG TCGTTTTGAC AAGAATAAAG CGGAGCAAGC TGCTCGCTGG GCACCGAAGG AAGCCAAGGC AAAAACGCTT CTTGCACTAT AG
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Protein sequence | MARPYPYTRL EECAWQPEDV ARHLAALANG NFSVDSSSTQ LLSHGWSTRQ ISTLRLEFGA NRMPGDDGDK HKTFMSQYTA CVSPIFTALV SQLKEPLILM LLGSAAVSIA LGNQSEAISI AFALLIVSMV AAVQEYRSEA ALEKLATLVP HTCTVLRDGQ VIDGFFAKEL VVGDLVLLAT GDRVPADCRV VDSVELILDE SSLTGENHPV AKTGEGVVLG ASPPLTQQKN VVFAGSLVNA GRGRALVIAV GVSTEFGKVA TELSSVASRK SPLQIKIDEL GQRLAGLSSI AISIIAMLGW ILGRPFLETL TVAVSLAVAA IPEGLPICVT VTLALGVLRM ARRNAIIKKL PVVESLGCAT AVASDKTGTL TQNEMTVRTL FALAYPKAKF GFTGIGYGSK SGNLVYLDAD GSTGPKAPSG KVTSECDEYA ALSALLNTAC LCNNATLLQS LDSELSEGHT GGALSGQPTE LALLVAADKA NLEDPRAQYH RLQEIPFTSD RKRMEVRARP VSGRQYGSLY FVKGMPEKIL GECSTYGQSN GSAELLVEDD RAEVLLQARR MAAGGLRVLA FAYGQSLGEL VFAGLVGMED PPREGVCDAV RQLRRGGVKV MMVTGDSKET ALAIAQRCGI LGSENGDTAA LSGAELDAIS PQNLAESISG VRVFYRVAPR HKLAIVRALQ ERGDIVAMTG DGVNDATALK GADIGIAMGL KGTDVAKEAA DVVLADDDFR TITMAIAEGK GIFFNIRCFL AFQLSTSFAA LTMASIATAF GLPSPLNATQ ILWINILMDG PPAQSLGVEP VDEKILRAKP RKADEPIVTR ALLLRATSSA ALIVFLTLKV FSNELDDGAV NRRDTTMTFM MFCNCDLFNA YVCRSADKPF YKINLYSNPA FLWAIGGSVV GQFLVVYWLP LQKVFQTEAL TFYDIAYIVL LSSMVLWLDA LRKTFFPSVF CDGYHTSPFA SKKTSRSAGL RQHHSWLNFR RFDKNKAEQA ARWAPKEAKA KTLLAL
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