| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_50345 |
|---|
| Symbol | |
|---|
| ID | 7198996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011696 |
|---|
| Strand | + |
|---|
| Start bp | 373373 |
|---|
| End bp | 375034 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002185185 |
|---|
| Protein GI | 219130045 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0816818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGATATTTTC CCATGTCTTC TGGTTCTTCT CTTTCCCCGC TGTACGCGCC ACGCTTTGCG
GAAGGTCTCC AAATGCCGGC GGAAGACTGT CGCGACTATC TACGAACAGG CCGATGCAAG
TATGGGCCGT CATGCAAGTA TAATCACCCA GCTAATGTAC AAAGCGGAGG GGGTATGCGG
GCGCCTATTG ACCCTTCGGA ACCACTCTTT CCCGTGCGTC TCAACGAGCC ACTCTGCCAA
TACTACATGA AGCACGGCAG CTGTAAATTT GGACAAGCAT GCAAGTTCAA CCACCCTCCT
CAGCTTAGCC ACAGTTCACA AGTTGCAGGG GACACCCCTG TTACCGGCAA TGGGCGTAGT
ACCGACGTAC CTGTCGTCTT CAGTCAATGC GATGGTCCAA TGATGCTACA ATTTCTTCCA
CAACGCCCCG ATGAACCGGA CTGCATCTAC TTTTTGAAGA ATGGACGATG CAAGTACGGA
GCAACTTGCC GCTATCATCA TCCGGTGAAC TATCACAAGC ACCGCGCGGA GGAATCTCGT
CGTCAACATC GAGCGCAACT TCAGGAGCAG TACGCGCCTC AAAAGGTACA ATACATTGCC
CAAACAGTGC CCAACGGAAA CTTCAAGGGT CAGCACGTGA TGTCTGATAA CCCTTTGACT
TTTATGAGCT ACGATGTGCC ATCCGGAACT CCAGGGTTCC AGCCAATGTC TCTTGTCATG
GGAGCCGATG GTAGTACTTC GTACGCAACT CACATCGGCC CAAATATAGT TACCGAGCAA
GGATCTTCGG CTTCATCTAT TGCTTCTTCT TACGAAACGG CGCCAACAGG CTTTGATCAA
TTCCAAGGCG ATCCATCCAT GTGGGCTCGT GCTCGACGCA ACGGCAGTGG AAATAGCCTG
ACAGCATACA CGATCGACTC ATCTAATCGA GGAGCGCGTC TTGCCATGAC TCACAGTCCA
AGCGAGGGTA GTATGGCTTC GCGCAGACAT CGTGCGAGCT CTCACGGAAG CGCGAGCGAG
AGCTCCTATC ACGATGTGAA CCAATCTGGA TTGAGTCGAA GCGGTTCGGT TGGTTCGTGG
CGCAATGATC GAGTTCCTTC CTCTACCTAT GATCGCCGGC TTCCGACACA ATACATTTCA
AGAATAGACG GAGTTGTGAG CGATCAACAA CCGCGTGGAC GACCCCCTTC TATGTCCATG
GCACCAGGAC ATCGACCCAG CCCCAGAAGC CGCAAACCAA GGGCGCACGG AGAAAATGAT
GAGGGCTTTA CCATGATGAC CTCCGCTCTG TTGAATATGC TTGACACACC GGAAGAGGCA
TCGACTGAAA GCTTCAGCGA CGAAGACAAC AATCGCTATC GCTTACAAGA GCCGTGTGAA
GAGCAACGCC CCCTATACGG CGACCCGTTG GACGTCGAAT CATCCATGTT TGAACGTTTG
TCTTTGAATG GTGTAAAGCA CAATTACCAA ATTCGATCCG TATCAGATAC AAACACGAGT
GATTCATGGT CTCCAACGTG GCAGGGTTCC TTAAGAGGGC CAGCTTCCCC TCCTGCATCC
TCACTCGATG GCAATGCTCA AGCTTTGTCG GCTATCCCAC CACGCCATTC GCAAGGTCAT
AACACCCCAC CATCCTCTGA TATCGGTCTC TTTATACCCT AG
|
|---|
| Protein sequence | MSSGSSLSPL YAPRFAEGLQ MPAEDCRDYL RTGRCKYGPS CKYNHPANVQ SGGGMRAPID
PSEPLFPVRL NEPLCQYYMK HGSCKFGQAC KFNHPPQLSH SSQVAGDTPV TGNGRSTDVP
VVFSQCDGPM MLQFLPQRPD EPDCIYFLKN GRCKYGATCR YHHPVNYHKH RAEESRRQHR
AQLQEQYAPQ KVQYIAQTVP NGNFKGQHVM SDNPLTFMSY DVPSGTPGFQ PMSLVMGADG
STSYATHIGP NIVTEQGSSA SSIASSYETA PTGFDQFQGD PSMWARARRN GSGNSLTAYT
IDSSNRGARL AMTHSPSEGS MASRRHRASS HGSASESSYH DVNQSGLSRS GSVGSWRNDR
VPSSTYDRRL PTQYISRIDG VVSDQQPRGR PPSMSMAPGH RPSPRSRKPR AHGENDEGFT
MMTSALLNML DTPEEASTES FSDEDNNRYR LQEPCEEQRP LYGDPLDVES SMFERLSLNG
VKHNYQIRSV SDTNTSDSWS PTWQGSLRGP ASPPASSLDG NAQALSAIPP RHSQGHNTPP
SSDIGLFIP
|
|---|
| |