Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_48547 |
Symbol | |
ID | 7194784 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011686 |
Strand | + |
Start bp | 178939 |
End bp | 181157 |
Gene Length | 2219 bp |
Protein Length | 728 aa |
Translation table | |
GC content | 51% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002183045 |
Protein GI | 219125560 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.700794 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATTCAAAACT CTCTTGACCC GACAGTACCT CGATGTTCCG CAAAGAAAAC AGTAGCGTCT ATTTCGAAGG AAAAAAAGGC AAGGATGTGC CACTGCGTAA GTCGGATCGA CTGCGCTTGC GTCAACAAGC CATGGAGTTG TTGTGTCGAT CACCACCGGA CACTTGTTCG GAAAATGCAG ATTCCGAAGT TGTAGCGTTC TGTCTAGAGC AGGATGCCGT ACTAGACGCT GCGTTTCTGC AAGGGGCTCT CTCGTCACGG AAACTCATTC TGGATGACGG ACGCAAGGTC ACAATGTACC TGCGATCACC GGAAGATGGA CAAAACACAA GTACTGACGA AATTTCCTTC AGGTGGCCGT ATCGGGAACC ATCGCCAGCA CAGTGCGTCT GGCTGGAGAT TGATTTTGGA CCCAGAAATA CACTGCAGGT TCCGTCCGTC GTCCTGCTTT CCGTCTTACC CAGTAGTAGT CTCCCAACGA TACCAGTCCC TCACCAAGTC TCCAAGTATC TCTGCCGGGG AGCCGATCTG ATGCGTGCTG GTATTTTCCA ATTACCTTTG TCATGGCCAA GCTCTCAACG CGTTGTTGCG ATCACTGTTG CTGGCAATCC ACAACCCTTG GCGGTCGGTT GGCTCGACAA CGCCGTGAAA TCCTTGCAGG ATGTAGGTCC ACAAACTCAA GGAATCGGAG TACACGTTGT CTCTTGCTAC GGCGACGATC TTTGGAAGCA GCAGCTGCCT CCTAAACAAC TACGCCATAA TCTTAACCGT GAAGCTCGAG TTAATCCAAC GGGCGGTGCA ACGTTCAATG CAGGACATTA CGGCAACTTG GGTTTCCAGG AAGGAGTTCG GGTGGTTCCC CTTTCCTCCT CGGCGGAATC ACACCCCGAT GCAGAGGGCG AGGAAAAACA TCATGGAACA GCTTCTTCAA AGAGCACCCG AGAAAAAACA AACCCCCCTT TTCCCGACGA AGAAGAGACT CCCCCAGTAC TATATGGAGG TGAAAATTGC GCTGGGATGG AAAATATTAC TGTGTCCGAC GACACCTATG GGTCAAGCAA ATCTAACACA TTGCTAGATA GGGATATGGA GAATGGAGAA CAGAAAATGC CATTAGAAGC TACTAATGAG GCTCTTCTGC ACCATGCCGT CTGCAAGGCA GTAGCCGCTC TTTCAAAATC GGACTTGCCC ATGGCGGTGG CAACCTTTTA TGCGCAATAC GTCCTACCGT CGCGACCTCA AGGTACCATC ATAAATCTGA AACAAACTCG ATACAAAAAG TTTGGCGTTT ACGTGCAGGA ACAAATAGAG CAAGGCTTGA TTTCTGTCGG CCCCGACGTG GCTAATAAAG ACCCGTTCGC AATGCTAATC GATGTGAACC GGAGACATCC AGATGTGCAG CATATCGTCC GAGAGGAAAA GGCGAATTCT CCTGAAAATG GGAGCAGTCG CTTATCGGGT CCCAACAAGT TAGTGCTGAT TGATTTGTAC ACAGTCCCAC ACCATTTTAT TTCCCCGCTG CGTCTGAATT CTGAGGCTGT GACGGCGGCG AATGCAACGA GCGAAGAACG GAAAAATTCA AGTATGCTGA CACTTAAAGA AATCCGAGCT CTCTTGGACG ACTATCTGAT ACGAGAAAAT CTGGCTCGGC ACAACACCGT CCACTTGGAT GGCCCCTTGA CCGATGTCTT GTATAAGAGG AAAAGGACGT CTGGAGATCC GGTCCAATCT ACTCCACAGG TGCTAACACG AAAACAAGTT GCTTTGGCTT GGCAAGATAA AATGGAGCGA GGTTTCGCCC TTGTTAAAAT GCCGGGCAAC CGCATCGTCA AATTAGGTCG GGGACCGCCG CCGCAAATAT CGATTGAAGT AGAGCAACGG CAGTCAAAAA AGTTCGTTAC AAGGGTTCGG GGTTTGGAAA GCTATAACAT CGACGGTCGA GTCTTTTGCA AAGACGTCTG CCAGCGCTTT GCTTGTGCGG GCAGCGTCGA CTCGGATGCC CCGGCCGGAA GGGCCACACT CAAAAAGAAT CAGGTCGAGT TAATCTTACA GGGTAATCTC GTAGACGCGC TGGACGCGTT GCTAACAGGC GAGGAAAATG TGACCTCTCA TGGGGGAGCG AAGGCATCAC CGTACGCGAT TCCTGCGAAT GCTATCAGTG TGACTCTCCG CAAAGGAGTG CCAGCACGGA AACGCCGACC AGTTCCCGCA AAGAAGTAG
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Protein sequence | MFRKENSSVY FEGKKGKDVP LRKSDRLRLR QQAMELLCRS PPDTCSENAD SEVVAFCLEQ DAVLDAAFLQ GALSSRKLIL DDGRKVTMYL RSPEDGQNTS TDEISFRWPY REPSPAQCVW LEIDFGPRNT LQVPSVVLLS VLPSSSLPTI PVPHQVSKYL CRGADLMRAG IFQLPLSWPS SQRVVAITVA GNPQPLAVGW LDNAVKSLQD VGPQTQGIGV HVVSCYGDDL WKQQLPPKQL RHNLNREARV NPTGGATFNA GHYGNLGFQE GVRVVPLSSS AESHPDAEGE EKHHGTASSK STREKTNPPF PDEEETPPVL YGGENCAGME NITVSDDTYG SSKSNTLLDR DMENGEQKMP LEATNEALLH HAVCKAVAAL SKSDLPMAVA TFYAQYVLPS RPQGTIINLK QTRYKKFGVY VQEQIEQGLI SVGPDVANKD PFAMLIDVNR RHPDVQHIVR EEKANSPENG SSRLSGPNKL VLIDLYTVPH HFISPLRLNS EAVTAANATS EERKNSSMLT LKEIRALLDD YLIRENLARH NTVHLDGPLT DVLYKRKRTS GDPVQSTPQV LTRKQVALAW QDKMERGFAL VKMPGNRIVK LGRGPPPQIS IEVEQRQSKK FVTRVRGLES YNIDGRVFCK DVCQRFACAG SVDSDAPAGR ATLKKNQVEL ILQGNLVDAL DALLTGEENV TSHGGAKASP YAIPANAISV TLRKGVPARK RRPVPAKK
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