| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_47998 |
|---|
| Symbol | |
|---|
| ID | 7202998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011683 |
|---|
| Strand | + |
|---|
| Start bp | 655767 |
|---|
| End bp | 658434 |
|---|
| Gene Length | 2668 bp |
|---|
| Protein Length | 782 aa |
|---|
| Translation table | |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002182272 |
|---|
| Protein GI | 219123938 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0260964 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GCGTGGACGG GAGCCGTTTT CCGTGCCCTT GAATTGCAGT CGCATCACAC CATGGTGGAT
AGAGACACCC CAACCGAATA CACTCTTCTT ACCCATCTAA ACACAAGTCT CCACCAACGT
ACCATCGTTG TGGAAACAAG GAAAGTCGTA CTGTAGAGAC CAGCGCCGCG CCGTACCGCA
CCGCACCAAC AGTACACTAC TCTTGAGAAC ACAAGCGACG GCCTACACAA CAAAAGAACA
AACCGACCTA TATAATGGGA AACTCGGCTT CCTCGTTGCC GTACGCCATT GGGAAACAAA
CGGCGATCGT CAATGACGGT TGGGCGTTGC ATGAAGGCAC ACAAAAGTCG GACGGTTCGG
ACGTGTCGGT CTTTGTGGCG AAGAAAGCCG TCTTGAACAA GACCGCCATC GATCGGGCAC
GCGATCCGTC CCGGACGCAG CTCGAACCCG CCCTCCACCA CTTCTCCTAT TGCAAGAAAC
TGCGTCATCC GCACATTCTA CAGGTACTGG CGACGCTCGA CACCGATCAC CCTAACGACG
CCAATAACGC GACTGCGGTA TCGTCTACTG CCGCATCGCA AGCGACCAAA GAAACGGGGG
ATCTCATCAT CGTTACCGAA CGCTGTGTGC CACTCGACGT CTGGTTGCAG CAAGAAAATC
CTCCCCCGGA ACAATTGGCC TGGGGACTAG AAGTTGTCGT TTGTGCCCTA CATTTTCTAC
ACGCTTCCGC CAATCTCGCG CACGGAAACA TCTCGCCGGC CTCTTTTTTC GTGACCCGCG
CCGGAGACGT CAAACTCTGG AACTTTGTCC TCGTCACCCC AACACACCAG GCTTCCGGAG
GACTCTCGAA CCATTTTCAA ACCTACGAGG ATCTCCTCAC CCCACAGCCC TACCGTTCGC
CCGAACGACA ACAACGCAAT TGGGCCGCGC TAGCGGCGGA GGGGACGCAC GCCATGGACA
GTTTCGGCTT GGCTTTGTTG ATTGCACACT TTTACGGAGG CACGGTCCCC CCGCCTCTGC
AGAAGGCTGT CCAACGACTG CAAACGCCCA ACGTCAAAAT GCGCCCCCGT CTTCAACCAC
TCCTCAAATG CCCGCTCTTC GATACACCCT ACCAAAAATT ACAACTCCAA CTCGAAGAAT
TCATGGTCAA ACCGGTGGAA GAGAAAATCG CATTTTGGCA AAACTTGACG CCCCAGTTAC
AGGCCGCCTT GATTCCGGAA AATCTAGCCG TGTACAAGTT AATGCGCATC ATGAAATCCA
CCATTGACAC CATCTGCCAA TCTGACTCGA TGCGATCACA AGATATGTAT CGACGAGAAT
GTACGTGCAG TTGTGTCTGT ATGACCATAC ATTAACATGT TCACCGTGGT ATCTGATTAA
CACAGATTTG TTGTGCGAAT CTCACCCCAT TCTGGTTCCG TCGCACCACG CAGTATCCTC
TATACTAAAA CCGCTCTTTT TTGTTGGCGA GCATTACTTG GACAACGATT TTGGCAAAGA
ACTGACGTCG ACCGTTTCTA TTTTGTTCAC GGTGAACGAC CGAGGCATTC GAGGCGCTCT
CTTGCAAAAG GCTTCCCTTT TTTCCAAACA TCTCGACAAG AATACCCTCA ATCAAGCTGT
TTTTGAGCCC GTGTGCAGTG GATTCTCGGA TTCCAGTTCC GCCCTGCGGG AACTCACCCT
CAAAGCCACG CTCGGCATGG TCCCCTGCTT GACGCCGCCT AGTTTAGAAA AGCTTTCACG
GTATCTCGTA CGCTTGCAGA GCGATCCCGA AGCCTCTATC CGGACCAACA CTGTCATTTT
CTTAAGAAAA CTCGCACCAC ATTTGACCGA TACGACGCGC CACAAAATGC TGCTGCCAGC
TTACGTAAGG GCCCTGAAAG ATCCTTTTAC GCCATGTCGA TTGGCAGCTT TGCAATCGGT
GCTGACTTCC AAGGAGTTTT TCGAACCCAA CATTTTGGCG GGTAAGGTAT TGCCTGCGGT
TACACCCTCA TTGTTGGACG GAGCAGCCGA TGTCCGCAAA GAGGCCTTCA CTGTAGTGGA
CGATTTATTG TTCGCGTTGC GGCAAGAAAG CGAACGCATG AACTCCCAAC CGGATGCATC
CGCAAAGACC GCGGTGACGG CGCCGGGAGT ACCTCCATCT GTCCCCCAGA CGTCGACTAC
TCCAGTTCCG TCGGCGCCGT CGTCTGGAGG ATACTTGACC GGACTGTCCT CCTGGATGAC
ATCCTCGGCC AAGCCGACTG AACCTGTTCC GTCGACGGCA AGAGCTGGAC CGCCGCGTAG
TGCCCCAGCT CCCGCCATAT CTGCGCCAGC CGCAGGAGCA GGGTATACAC CTGCTGCACC
CCTCGCCATG GCGCACCTGA CGCTCGATGA TGATGCCAAT GACGACGACG GTGGATGGGG
GGACGACGAT CTCGATGTAA GTGAACCGCC GAGGGCACAA CGACCAACGG GGGTGACCAC
GACAAAGAGC TCCTTGTTTG CACCGGCACC TGCAGAGGAC GACTTCTTTG GGTCATTTGA
TGCTAAGCCT GTGAAGCAAG CTTCTTTGCG TGTGAGCAGT GCGGGCAAAC TCAGCATTCC
TGCGAAAAAG ACGAAACCAG TTACCAAAGC AGCTATTACA AAACTCGCTG CAGACGATAA
CATGGACGAC GGATGGGACG AATTTTAA
|
|---|
| Protein sequence | MGNSASSLPY AIGKQTAIVN DGWALHEGTQ KSDGSDVSVF VAKKAVLNKT AIDRARDPSR
TQLEPALHHF SYCKKLRHPH ILQVLATLDT DHPNDANNAT AVSSTAASQA TKETGDLIIV
TERCVPLDVW LQQENPPPEQ LAWGLEVVVC ALHFLHASAN LAHGNISPAS FFVTRAGDVK
LWNFVLVTPT HQASGGLSNH FQTYEDLLTP QPYRSPERQQ RNWAALAAEG THAMDSFGLA
LLIAHFYGGT VPPPLQKAVQ RLQTPNVKMR PRLQPLLKCP LFDTPYQKLQ LQLEEFMVKP
VEEKIAFWQN LTPQLQAALI PENLAVYKLM RIMKSTIDTI CQSDSMRSQD MYRREYLLCE
SHPILVPSHH AVSSILKPLF FVGEHYLDND FGKELTSTVS ILFTVNDRGI RGALLQKASL
FSKHLDKNTL NQAVFEPVCS GFSDSSSALR ELTLKATLGM VPCLTPPSLE KLSRYLVRLQ
SDPEASIRTN TVIFLRKLAP HLTDTTRHKM LLPAYVRALK DPFTPCRLAA LQSVLTSKEF
FEPNILAGKV LPAVTPSLLD GAADVRKEAF TVVDDLLFAL RQESERMNSQ PDASAKTAVT
APGVPPSVPQ TSTTPVPSAP SSGGYLTGLS SWMTSSAKPT EPVPSTARAG PPRSAPAPAI
SAPAAGAGYT PAAPLAMAHL TLDDDANDDD GGWGDDDLDV SEPPRAQRPT GVTTTKSSLF
APAPAEDDFF GSFDAKPVKQ ASLRVSSAGK LSIPAKKTKP VTKAAITKLA ADDNMDDGWD
EF
|
|---|
| |