Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_47518 |
Symbol | |
ID | 7202292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011681 |
Strand | + |
Start bp | 869255 |
End bp | 872970 |
Gene Length | 3716 bp |
Protein Length | 953 aa |
Translation table | |
GC content | 49% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002181645 |
Protein GI | 219122631 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.668741 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAACAT CCGTATGCAA TAGCTCCAGC AATCCACGAT ACGGCCCATT GGAGCCTCGC CGTCGAAAAA CTAATATACA AAGGATGCTA CGACAGGAGA GTGGTGGTCG GGCATCCACC TACCGTCTAC GAATTACCCA GCCCTGTCCA ATCCTTTTGC TGCTTCTTTT ACTAATCGCA CAGTCTTCGG TGTTTGTATG GTACCACACC TGTGATGAAG CATTTTTTGT AGACCGTCCC ATCAATGAAC AAGGCATCCC AGCATTTTAC AAGCCTTCCG AACATGATTT CTGTAAGAGC TTCGTCCGGC ACGGGCTCTT TTCGCTTCTG GGGAATGGAA TGGTTCCGAA TGACGGTAAA ATCGAGAACG ACCTCTTCAA CACAGCAGCG CACACCCCGA AAGACCGCAC TACCTTGTCC GCTTCACGTC GTGCTTCTGC AGATTTGAAG ATGATCAAAG CCACAATCGC TGGAGAACCG ACAAAGGCTA CTGGGCCTGA GGACAGCTCT GTTTCGCGCG ATTTCATGAA TACCTCTGCA TCAAAAGAAG AGCATCTCGA AGTGTATGGA GGAGTTCCAG GCAAGAATCA ACATACAGAT GAAGCAATTC AACCGGTTTC CATGTTACTG CTCCGAGCTG TCGGAAACTC TCTTCCACCG CGTCACAGCG CTGAACAAAC ACTAAGAAAT CTGGACTTTG TCCTGACGTA CGAGGAAGCT TTCCCAAATC TGTCTCGCCA TTGGTTCCTG AACCGGCTTG TGGATCCACA GGTAGAGCAG CAAGTGGTGC AAAGGCTTCA ACAAGCAAAC GAATCCTATA CGATTATTCC CTTCGATTTG AAGTCCTACG ACTCCCACGT GTATCGTTTC GATTTGTTGG ACTTTCCCGA TCAAATTCAT TCGACCTACT CATACAACAC GTACACAGGG TTTTTCCTCG GGTTGAATGC CGAGGATCGT ATTATGCGTG ATAAGCTGGT GTATACTGCC AACGTCAATG GAGTTCGCAA TGAAATGCTC AATTATGGCA GGCACCTTAG TTCTGCAGAA TACATTCTCC CGTTTGACGG CAACTGCTTT CTCGCTCGAA ACGCTTGGGA AGCTATGCAG CGGAATATAC AACACAATCC AGCGGCAAAG TACTTTGCCG TTCCAATGGA TCGTCTTGTC GAGGAAAATG CAGCACTGCT GTCAGGTTCA TACAAGCCCA ATCCAGTCGA AGAACCCCAA ATTATATTTC ATCGAACGTC AATAGCCAAT TTCAATCCAA ATTTGCCTTA CGGTCGTCGT AACAAAGTGG ACTTGCTGCG TCGGTTGGGT ATTAAAGGCA TTTGGGAAAA CAATGAAGGG AATAAGTGGG ATGTCATCCT AGAGGCAACA AACCCAGTTG CGGAGATAGA AGCAAACGTG ATCGAAATGA CTGGAACGGC TGGATGGATC TCTCGGCTGT ACTCAGGGAA CAAAAATGCG GAGTTGACTG ATGCGGGTGC TTCTACAACT CGGGTCAGGA TGCGTCGTAC AGCAATATCG ACGCTACTGG ACCGTTTGGA CTTGCGTGCA GCTGTGACCT TGTACAATTT TACTTCCAAT ACGATGCTTT TCTATGACGA GCAGCAGCTG TACCAATCGC ATTTACTTTG GAAAAATGGA CAATTGCAAA ATCCAATGAT CAACAGCTTA ATGGAAAAGG CTGCCCAATC CCTAAACGAA GGTCCTTGGT CTGTTGTGGA CAAACGATCA TTCGGCTGCG GGCCCTCACT GAGTTGTCGT GACTACTACA ACCCCTGGCC ATACATGTGG CCGCAGCGCA ACGAATCCGG TAGTATCGAT TGGACAAGGG AGTTTGTAAT GAACAACGGT GAAATCCTTC CGGGAAGTGT ATTGTATACT GAAGGAAGTG AGCACTTTGA CTACACGCGC TTAGAGTCGA TGCAGCGCAA TACTACCGTT TTAGCGCTGG CCTATGCAAT ATCTGCCAAC CAGTCCTACG CCGAAAAGGC TGCTGCCAAC CTTCGTGTAT GGTTTCTTGA ACCGGGGACC AGAATGAATC CCAACCTCTC GTACACTCAG GTTGCGTGGG TGGGCAATCC GCCCCAGTGG AGACGAAAAG CCTTTGGCAC GATCGAAATG AGTGGTGTGT ACTTTTTTCT GGACGCAGTT AGGATAGTAG AAGGCTCCGG AGCCCTCTCG ATTCTGGAGA TCCATAATTT ACGAAGATGG TTTCGCGAAT ACCTTCATTG GCTATATATG TCCAACGGAC GGAAAGAAGC TTCTGAATTC GATCCAAATG GCGGCATACC GGAAGTGTTT GCACCAAATC ATATCGGTCT TAACTTTGAT ATACAGCTTG CTTCTGTTGC CGCATATTGT GGCAATCTTT CCTTGGCAGT CCGCACTATC CATAGGGCTG TTTCTCGTCT AGATGCACAT GTCAACTCTA CCGGTGCGAT GCCAAAGGAA CAACGGGTGG GCAGCTGCGA GCACTTTACC GCCTTGGCCT TGAACGGGTG GTCGGTGGCT GCTCGTGTCG CTTCATCGAT AGGGATTGAT TACTGGCGAC GATTCCGGGT GGCGAATCGA AACATTTCCA AGCTGTGCCT TGCCATGGAA TACGGCAACC CACTCCTGGA CAACCGAGAG ACTTGTGCAG GCGACGGAGC TCCGATTGAT CCCTCCCGCT GGTGGCCACT CTTTTTCGAA GCCAAGTCAC GGTGTCCTCA CTTAGAAACG CGCTACCTTG TACAGAATGA GCGCGATCCG CCGGAGCATA GTGACTTTCC TAGTCATCAC AACCTGATTT CGGGCTCCAA CATGCCATAC TCAGGCGTAG CACCCTTTTG GAATTTGAAT CTGCCACCGT AGCCACAACA TATTACCATG ATAGTAACGA CAACACTTTA CCATTCTAAA CCGCCCTCCC CCTCAATCGA AAAACGGCAC AACGTGTTTG CATACGTTGC CTATGCGTAT ATCAAACATC AATAGTGCCG TTCTTGGCAG TTCAATTCCG GCACAAATCC GCGTTTGTGC CGTCTTCCTG TATTGTCTTT AGCGGTGTGA AATTGCTGGA CACGACGTTA CGAAACAAAC AATCAAATAC CTCTGTATTG TAGGCTCGAT ATAAATTGTC GTCGCGCTCA TACGCATCGC ATACGGCATT GTTAGCTGGA CAGAAAGTGA CTTCCGTCAA CGTAGGCTCA ATTTTTGGTA CCGACTGTGA GGTCAATCCG TCGTCAATTT CCTGTGAATC GATTGCAAAC ATGCAATCGA CACCATACAC GGCACGCGAA TTAGGACTCT CCGCCATGGT GGGAAAACCT CGGGTCATGC CGTCAAATAA CTCACGAACC ATGACTTGGA TTTTAGGCCA GATGCAATCC TTCCAGTCAA ACGCAGTGTA ATCCTGCTCC AACTTGGCGA TAGTTTTGGT GTCGAAAGGA AGAATATGGA TATCGTCGTC GGTCGACCGA GCTTCGCTAT CGAGCAAGTG AGTGGCGGTC AAGACAGATT CAGGATCCAT ACGATCACGA GGTGTCGAAA TCGAATGAGA CTTGTGGGCA ATACGAAAGT ACACTCGATT GTGGATGTAC AGGCGAGGTT GGCCGGGAGT TGCTTCGGTT AAAAGTACGA TACAACGGCA GTCAATTTTG CGGCCGTCGT AGGTGACGGA ATTTTCCAAA TAGCGTTGAA CGACACGACT TTCGCCACCA GCATCA
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Protein sequence | METSVCNSSS NPRYGPLEPR RRKTNIQRML RQESGGRAST YRLRITQPCP ILLLLLLLIA QSSVFVWYHT CDEAFFVDRP INEQGIPAFY KPSEHDFCKS FVRHGLFSLL GNGMVPNDGK IENDLFNTAA HTPKDRTTLS ASRRASADLK MIKATIAGEP TKATGPEDSS VSRDFMNTSA SKEEHLEVYG GVPGKNQHTD EAIQPVSMLL LRAVGNSLPP RHSAEQTLRN LDFVLTYEEA FPNLSRHWFL NRLVDPQVEQ QVVQRLQQAN ESYTIIPFDL KSYDSHVYRF DLLDFPDQIH STYSYNTYTG FFLGLNAEDR IMRDKLVYTA NVNGVRNEML NYGRHLSSAE YILPFDGNCF LARNAWEAMQ RNIQHNPAAK YFAVPMDRLV EENAALLSGS YKPNPVEEPQ IIFHRTSIAN FNPNLPYGRR NKVDLLRRLG IKGIWENNEG NKWDVILEAT NPVAEIEANV IEMTGTAGWI SRLYSGNKNA ELTDAGASTT RVRMRRTAIS TLLDRLDLRA AVTLYNFTSN TMLFYDEQQL YQSHLLWKNG QLQNPMINSL MEKAAQSLNE GPWSVVDKRS FGCGPSLSCR DYYNPWPYMW PQRNESGSID WTREFVMNNG EILPGSVLYT EGSEHFDYTR LESMQRNTTV LALAYAISAN QSYAEKAAAN LRVWFLEPGT RMNPNLSYTQ VAWVGNPPQW RRKAFGTIEM SGVYFFLDAV RIVEGSGALS ILEIHNLRRW FREYLHWLYM SNGRKEASEF DPNGGIPEVF APNHIGLNFD IQLASVAAYC GNLSLAVRTI HRAVSRLDAH VNSTGAMPKE QRVGSCEHFT ALALNGWSVA ARVASSIGID YWRRFRVANR NISKLCLAME YGNPLLDNRE TCAGDGAPID PSRWWPLFFE AKSRCPHLET RYLVQNERDP PEHSDFPSHH NLISGSNMPY SGVAPFWNLN LPP
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