| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_47392 |
|---|
| Symbol | MAT1 |
|---|
| ID | 7202438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011681 |
|---|
| Strand | - |
|---|
| Start bp | 514658 |
|---|
| End bp | 515788 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002181741 |
|---|
| Protein GI | 219122830 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | AGAGAGTGTA GCGTCTTGGT GAATAAGCAT TCTTGCTAGT CATGGAAGAG GATCCTCAAG
ACGATCTTTT TCGATGCGCC TTGTGCGGGA CCGCGGAAGG TGATTCATCC AATCTATCAT
CTCATACATC GCTACAAACG AATGCCACGG TCCGGTGTGG ACATCAATTG TAAGTAGAGT
TACTTTGGCT GTTCTTGGAC AATAGTGTCT ATACCATCAG ACAACGTCAT CATTCCCATT
GTGATGTATT GCCTGGCCAG CCGAAAACAA CAGCCGCAGG GGATTTCAGC ATATACGGAA
AAGACTTGCT CCACGAAAAT ATCCGACACA CTTCTAATCT CGTTGGGCTC TGCTTCCACT
GTCTATTCAC ACAGCTGTAA CTCCTGCATC GATCGAGAAC TCGTCCGCAA GCGTGAATTT
CCCTGCCCTG TATGTCAAAC CCCCGTCAAA CGTGTGACGC TAACCGTCCG GAGTCTAGAC
GATGTCCAGT GCGAAAAGGA CACATCTTGG CGTCGACGGG TACTGAAAGT CTTCAACAAA
ACTGAGCCAG ACTTCTCTTC TCTGCTGGAA TTTAACAATT ATCTGGAACA AGTTGAAGAC
ATGATCTACT CTATTGTCAA CGAAGAGCCA GATGCTGAAG CTTGTAAGGC GAAGATTAAG
GAGTATGAAA ACGCTCACAA GACAGAAATC GTCATTCGGC AATCCCAACG CGCCGATGAG
GAACGTTCCA TCCAGGATCG GATCGCCGCT GAGCAAAGAA GCACCGAGCG ACTCCGGCGT
GAAGCGTTTG ATGAGGAAAA GGCTGTCGCT AACGCTAAGA AGCGTCTAAA GCAGGAAAGT
ACGCAGGTGT TGCTAGGAGA ACGTGAAGAA GTATCGGCGG AGCTGCGACA AGCCCAGATG
CAAGGGTACC GCAATGAGTT AAAGAGGCAG TCGAGAGGTA AAAAAAGCAG CGACTTTGTC
TCGCCACGCG TTCGGGAACC AGCCGATGGT TGGAAAAAGG AAACACTGGA TCGGCAGCTG
TATTTAAAAC GGCAAGCAGC GGGTGGGGGA ATACCGACGG GAAGTATTGC ATCACTGGAA
CGCAACTGGA ACGAAACGGT ACAATCACTT TTTGCCAGAA TGAAAGCCTA A
|
|---|
| Protein sequence | MEEDPQDDLF RCALCGTAEG DSSNLSSHTS LQTNATVRCG HQFCNSCIDR ELVRKREFPC
PVCQTPVKRV TLTVRSLDDV QCEKDTSWRR RVLKVFNKTE PDFSSLLEFN NYLEQVEDMI
YSIVNEEPDA EACKAKIKEY ENAHKTEIVI RQSQRADEER SIQDRIAAEQ RSTERLRREA
FDEEKAVANA KKRLKQESTQ VLLGEREEVS AELRQAQMQG YRNELKRQSR GKKSSDFVSP
RVREPADGWK KETLDRQLYL KRQAAGGGIP TGSIASLERN WNETVQSLFA RMKA
|
|---|
| |