| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_45852 |
|---|
| Symbol | |
|---|
| ID | 7200959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011676 |
|---|
| Strand | + |
|---|
| Start bp | 468270 |
|---|
| End bp | 469976 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002180054 |
|---|
| Protein GI | 219118569 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0205914 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TGCACGATTC ACATCAGGCT ACTCACGACA ACTGCGTGTT TTTTCACATC AGGCAACACA
TTCTCTTTGT GATTTCAACC ATCCACCATG AAACGATCCA ATCGCTTGAT AGGAATACTT
GCCGTTGCAA CCTCCACAGC CGTGGTTCTC CTGCAGACGT CAAGGATTGA TGCCTTTGCA
ACGGCAACTC TCCCTTCGAC AACGTCTTAC CGTATTCCGG CGTCATTAAA AACTACACAA
ACATCATCTC GGGCCTTTCT CACGTCCAAA AAGAAACTCC ATTCGTTGCG GTCTAGCGAT
AGAATAGCCA CATCCTTCTT ATCAGCCGTC GTTGTCGACA CTTTGTATAG TACTACTACG
GACACTGGAG GGAAACTACA ATCCAAGAAA GGATCCTCCA AAACATCATC TTCCCAACCA
AAGAAGGAAG GCCACAATCT CATGGACTTC CTCGGTCCAG TACTGTCCGC CGCACTCCTC
GTAACGGGCA ATACCTTTGG GGCGGGTTGC CTTGTTTTGC CGGAATTGGC GAAAGGTCCA
GGAATGGCCG CGTTTTCGTC TCTTTTTCTC GGTGCCTGGA CCATCAACTT GGTTTCCGGG
TTGATACTGG CGGAAGTTGC CATCCGTCAA AAGGAAGCAG CCGTACAGCA GGGGGACGAT
AACGTCGTGC CCAGCAGCTT CAAAGAATTT GCTCAGGTCA ATCTCAACTC TTCCACTGCC
GCAAATGGTG TCAGCGCCAT TTCGGTCTTT GTCAATTCCT GTGTCATGAG TTTCGATCTT
TCCCGAGTCG GCCAAGTAGG TGCCAATCTA TCCGGACAAG CCGTTCCCAA TGAGCTCATC
TCCGCGGGCT GGGGTCTCTT GCTCGTCACA ATTTTGTCCA CGCAGTCCAG CAAGAATCTA
AGTCGCGCCG CGAGCATGTG TGCAACGGTA CTGTTCCTGT CGTTTGGATC TTTATTGTTG
CCCGGACTCG CACACGTGAC CGATCCGTGG CAAGTCTGGA CGGCACCAGC GGCGATAGAC
TTTACCGGCA GTCTAGCGGC CGCAGCCCCC GTGGTACTCA TGTCCATGAT ATACCAAAAC
GTGGTACCGT CCGTGACCAA AATTTTGAAC TACGATCGCG TCCAGACCGT GTCCGCCTTG
ACCTTGGGAT CACTGTTGCC TCTCGTCATG TACGTGGCCT GGTGCTTCGC CTGGGTCGGT
GGAGGCATTG ACACGACGAT CGGTACCACC GCTGGTATAG GTGGACTCCT CATGACGGTG
TTTTCGCTCG CCACCTTGGC GGGATCCTCG ATTGGTTCCG GTATGTCGCT TTCGGAAGAA
ATTGATACCT TTGTCCAGCC CAACGCTGCT CCCCGTACGA AGAGTGGTGA TACAGAAAAT
GAACAGGCAG TACGCGGCGA GTACCAGATT CCTTCGGTGC TGCTAGCCGT CACGGCACCC
TTACTGGCTG CCAACGTCAT GACCGCGACG GGTCATGATA CTACGGAAGC CCTGCGATTG
GCCGGTTCGT TTGGATCACC ACTGCTGTAC GGCGCCATTC CTGCTCTCAT GGCCTGGCAG
CAAAGGGCAC AACAGTCGCC AAAATCGCCG CATATGATAC CGACGGCTGG CCTCGGTGCC
TTGGGACTCC TATCGACGGG ATTCGTCGGC AACGAACTGG TTGATGTTGT GGAGCGTTTC
TTGGCCGTGC CCGTCTGAGA AATCCCA
|
|---|
| Protein sequence | MKRSNRLIGI LAVATSTAVV LLQTSRIDAF ATATLPSTTS YRIPASLKTT QTSSRAFLTS
KKKLHSLRSS DRIATSFLSA VVVDTLYSTT TDTGGKLQSK KGSSKTSSSQ PKKEGHNLMD
FLGPVLSAAL LVTGNTFGAG CLVLPELAKG PGMAAFSSLF LGAWTINLVS GLILAEVAIR
QKEAAVQQGD DNVVPSSFKE FAQVNLNSST AANGVSAISV FVNSCVMSFD LSRVGQVGAN
LSGQAVPNEL ISAGWGLLLV TILSTQSSKN LSRAASMCAT VLFLSFGSLL LPGLAHVTDP
WQVWTAPAAI DFTGSLAAAA PVVLMSMIYQ NVVPSVTKIL NYDRVQTVSA LTLGSLLPLV
MYVAWCFAWV GGGIDTTIGT TAGIGGLLMT VFSLATLAGS SIGSGMSLSE EIDTFVQPNA
APRTKSGDTE NEQAVRGEYQ IPSVLLAVTA PLLAANVMTA TGHDTTEALR LAGSFGSPLL
YGAIPALMAW QQRAQQSPKS PHMIPTAGLG ALGLLSTGFV GNELVDVVER FLAVPV
|
|---|
| |